stromal cell derived factor 4

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Synonym

PSEC0034, RP5-902P8.6, SDF-4, stromal cell derived factor 4, 45 kDa calcium-binding protein precursor, SDF4, CAB45, Cab45, Stromal cell-derived factor 4

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:122.10 cerebellum:428.20 brain stem:- corpus callosum/glia:233.30 pineal gland:- peripheral nerve:214.70 spine:- retina:- eye:288 artery/aorta:209.80 vein:133.30 lymphnode:121.30 peripheral blood:309.70 spleen:397 thymus:167.50 bone marrow:39.40 adipose:201.70 bone:639.70 skin:158.40
GeneChip cerebrum:8.16 cerebellum:8.74 brain stem:8.12 corpus callosum/glia:8.38 pineal gland:- peripheral nerve:8.50 spine:8.36 retina:- eye:- artery/aorta:9.01 vein:8.82 lymphnode:8.80 peripheral blood:- spleen:8.93 thymus:8.50 bone marrow:8.44 adipose:9.06 bone:- skin:8.51
CAGE cerebrum:3.84 cerebellum:- brain stem:3.77 corpus callosum/glia:4.01 pineal gland:3.80 peripheral nerve:- spine:3.69 retina:- eye:- artery/aorta:4.94 vein:4.66 lymphnode:4.36 peripheral blood:- spleen:4.45 thymus:3.81 bone marrow:- adipose:4.24 bone:- skin:-
RNA-seq cerebrum:3.99 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:5.31 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:5.22 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:236.90 placenta:313.30 prostate:214 ovary:111.80 testis:164.40 heart:306.50 muscle:20.10 esophagus:- stomach:106.20 intestine:291.60 colon:195     liver/hepato:31.70        lung:263.90    bladder:879.30 kidney:124.80 pituitary:- thyroid/parathyroid:- adrenal gland:253.90 pancreas:53.30 breast:130.10 salivary:-
GeneChip uterus:8.71 placenta:9.42 prostate:8.93 ovary:8.54 testis:8.95 heart:8.80 muscle:7.97 esophagus:8.60 stomach:8.93 intestine:8.93 colon:9.04 liver/hepato:8.89 lung:8.88 bladder:- kidney:9.14 pituitary:8.98 thyroid/parathyroid:9.06 adrenal gland:8.87 pancreas:8.83 breast:8.94 salivary:9.07
CAGE uterus:4.22 placenta:4.80 prostate:4.42 ovary:4.36 testis:4.60 heart:4.92 muscle:4.34 esophagus:4.27 stomach:- intestine:5.00 colon:4.95     liver/hepato:5.13    lung:4.92 bladder:4.23 kidney:4.51 pituitary:3.79 thyroid/parathyroid:4.49 adrenal gland:- pancreas:4.94 breast:5.09 salivary:4.23
RNA-seq uterus:- placenta:- prostate:5.03 ovary:5.15 testis:5.33 heart:4.14 muscle:4.23 esophagus:- stomach:- intestine:- colon:5.12     liver/hepato:5.52        lung:5.14    bladder:- kidney:5.23 pituitary:- thyroid/parathyroid:5.44 adrenal gland:5.40 pancreas:- breast:5.03 salivary:-

Gene Information

IDs

Refseq ID NM_016176
Gene ID 51150
Unigene ID Hs.42806
Probe set ID 217855_x_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000078808
GTEx ID ENSG00000078808

Orthologous Gene

Mouse[6]  NM_011341
Rat [0]  

Chromosomal Region

1p36.33  [1,152,288  -  1,167,411]

Gene Family (Interpro ID)

IPR002048  Calcium-binding EF-hand
IPR018249  EF-HAND 2

Link to Pubmed  (Pubmed ID)

8125298
8609160
9254016
10648803
12477932
14702039
15231748
15489334
16303743
17207965
17342744
17442889
18355758
18854154
19199708
19513569
19615732
19773279
19913121
19946888
20628086
21145461
21832049
21890473
21900206
21906983
21988832
22190034
23000965
23266954
23455922
23602568
24250222

Gene Ontology  (GO ID)

Biological Process

GO:0017156  calcium ion-dependent exocytosis
GO:0021549  cerebellum development
GO:0045444  fat cell differentiation
GO:0045471  response to ethanol
GO:0009650  UV protection
GO:0070625  zymogen granule exocytosis

Cellular Component

GO:0032059  bleb
GO:0005737  cytoplasm
GO:0005796  Golgi lumen
GO:0005770  late endosome
GO:0005886  plasma membrane

Molecular Function

GO:0005509  calcium ion binding
GO:0042802  identical protein binding
GO:0005515  protein binding