crooked neck pre-mRNA splicing factor-like 1 (Drosophila)

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Synonym

Crooked neck-like protein 1, HCRN, crooked neck (Drosophila Crn homolog)-like 1, CRNKL1, MSTP021, CGI-201, Crn, crooked neck-like 1 (Drosophila), hCrn, Crooked neck homolog

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:71.10 cerebellum:37.80 brain stem:- corpus callosum/glia:58.30 pineal gland:- peripheral nerve:- spine:112.30 retina:118.60 eye:17.60 artery/aorta:60 vein:- lymphnode:121.30 peripheral blood:36.40 spleen:37.80 thymus:77.30 bone marrow:39.40 adipose:40.30 bone:38.40 skin:62.40
GeneChip cerebrum:5.80 cerebellum:6.35 brain stem:5.82 corpus callosum/glia:5.59 pineal gland:- peripheral nerve:5.75 spine:5.70 retina:- eye:- artery/aorta:5.73 vein:5.02 lymphnode:5.26 peripheral blood:- spleen:5.63 thymus:6.69 bone marrow:5.33 adipose:5.37 bone:- skin:5.23
CAGE cerebrum:3.56 cerebellum:- brain stem:3.55 corpus callosum/glia:3.36 pineal gland:3.71 peripheral nerve:- spine:3.80 retina:- eye:- artery/aorta:3.02 vein:3.41 lymphnode:3.32 peripheral blood:- spleen:3.68 thymus:3.75 bone marrow:- adipose:3.58 bone:- skin:-
RNA-seq cerebrum:2.54 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:2.73 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:3.01 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:18.20 placenta:43.70 prostate:11.30 ovary:37.30 testis:47.60 heart:25.50 muscle:- esophagus:342.80 stomach:42.50 intestine:64.80 colon:33.90     liver/hepato:31.70        lung:48.90    bladder:- kidney:31.20 pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:37.20 salivary:-
GeneChip uterus:6.49 placenta:5.31 prostate:6.99 ovary:6.64 testis:5.86 heart:5.53 muscle:6.54 esophagus:5.44 stomach:5.70 intestine:5.41 colon:4.78 liver/hepato:5.18 lung:5.48 bladder:- kidney:5.55 pituitary:6.14 thyroid/parathyroid:5.88 adrenal gland:5.52 pancreas:5.18 breast:5.74 salivary:5.20
CAGE uterus:3.48 placenta:3.51 prostate:3.69 ovary:3.63 testis:3.49 heart:3.38 muscle:3.85 esophagus:3.49 stomach:- intestine:3.48 colon:3.28     liver/hepato:3.52    lung:3.48 bladder:3.61 kidney:3.39 pituitary:3.55 thyroid/parathyroid:3.46 adrenal gland:- pancreas:3.06 breast:3.86 salivary:2.39
RNA-seq uterus:- placenta:- prostate:3.41 ovary:3.33 testis:3.77 heart:2.40 muscle:3.50 esophagus:- stomach:- intestine:- colon:3.20     liver/hepato:2.18        lung:1.85    bladder:- kidney:2.96 pituitary:- thyroid/parathyroid:3.48 adrenal gland:2.73 pancreas:- breast:3.00 salivary:-

Gene Information

IDs

Refseq ID NM_016652
Gene ID 51340
Unigene ID Hs.171342
Probe set ID 219913_s_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000101343
GTEx ID ENSG00000101343

Orthologous Gene

Mouse[2]  NM_025820
Rat[1]  NM_053797

Chromosomal Region

20p11.23  [20,015,012  -  20,036,690]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

11342225
11780052
11991638
12084575
12477932
14702039
14759258
15189447
16344560
16396496
17296875
20360068
21139048
21900206
22365833
22586326
22939629
23000965
23084401
24457600
24816145

Gene Ontology  (GO ID)

Biological Process

GO:0000398  nuclear mRNA splicing, via spliceosome
GO:0000245  spliceosome assembly

Cellular Component

GO:0071013  catalytic step 2 spliceosome
GO:0005737  cytoplasm
GO:0016607  nuclear speck
GO:0005681  spliceosomal complex

Molecular Function

GO:0003723  RNA binding