trafficking protein particle complex 4

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Synonym

HSPC172, Synbindin, SBDN, Hematopoietic stem/progenitor cell protein 172, Trafficking protein particle complex subunit 4, trafficking protein particle complex 4, CGI-104, TRS23, PTD009, TRAPPC4, TRS23 homolog

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:99.60 cerebellum:226.70 brain stem:- corpus callosum/glia:116.60 pineal gland:- peripheral nerve:- spine:- retina:118.60 eye:58.80 artery/aorta:- vein:- lymphnode:30.30 peripheral blood:109.30 spleen:132.30 thymus:193.30 bone marrow:- adipose:242 bone:76.80 skin:19.20
GeneChip cerebrum:7.71 cerebellum:7.82 brain stem:7.84 corpus callosum/glia:7.71 pineal gland:- peripheral nerve:8.13 spine:7.86 retina:- eye:- artery/aorta:7.72 vein:7.53 lymphnode:7.89 peripheral blood:- spleen:7.96 thymus:7.84 bone marrow:7.25 adipose:7.65 bone:- skin:7.60
CAGE cerebrum:3.32 cerebellum:- brain stem:3.21 corpus callosum/glia:3.31 pineal gland:3.29 peripheral nerve:- spine:3.10 retina:- eye:- artery/aorta:3.09 vein:3.12 lymphnode:3.29 peripheral blood:- spleen:3.14 thymus:3.15 bone marrow:- adipose:3.38 bone:- skin:-
RNA-seq cerebrum:4.16 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:4.26 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:4.12 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:27.30 placenta:76.50 prostate:146.40 ovary:37.30 testis:95.20 heart:12.80 muscle:60.30 esophagus:- stomach:85 intestine:324 colon:59.40     liver/hepato:52.80        lung:63.50    bladder:376.80 kidney:363.90 pituitary:- thyroid/parathyroid:- adrenal gland:152.40 pancreas:115.60 breast:18.60 salivary:-
GeneChip uterus:7.71 placenta:7.44 prostate:8.47 ovary:7.93 testis:8.70 heart:7.27 muscle:7.73 esophagus:7.76 stomach:7.58 intestine:7.59 colon:7.47 liver/hepato:7.27 lung:7.87 bladder:- kidney:8.29 pituitary:8.50 thyroid/parathyroid:8.07 adrenal gland:8.13 pancreas:7.94 breast:7.88 salivary:7.34
CAGE uterus:3.25 placenta:3.19 prostate:3.35 ovary:3.30 testis:3.48 heart:3.11 muscle:3.41 esophagus:3.30 stomach:- intestine:3.63 colon:3.29     liver/hepato:3.34    lung:3.11 bladder:3.39 kidney:3.85 pituitary:3.50 thyroid/parathyroid:3.32 adrenal gland:- pancreas:3.40 breast:3.19 salivary:3.08
RNA-seq uterus:- placenta:- prostate:4.48 ovary:4.44 testis:4.79 heart:3.47 muscle:4.00 esophagus:- stomach:- intestine:- colon:3.74     liver/hepato:3.53        lung:4.19    bladder:- kidney:4.98 pituitary:- thyroid/parathyroid:4.26 adrenal gland:4.14 pancreas:- breast:4.27 salivary:-

Gene Information

IDs

Refseq ID NM_016146
Gene ID 51399
Unigene ID Hs.132760
Probe set ID 217958_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000196655
GTEx ID ENSG00000196655

Orthologous Gene

Mouse[1]  NM_021789
Rat [0]  

Chromosomal Region

11q23.3  [118,889,142  -  118,896,164]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

8125298
10810093
11018053
11042152
11805826
12477932
15489334
16169070
17110339
18466758
20035503
21139048
21525244
21826244
21832049
21906983
21963094
21987572
21988832
22505724
23625650
24104608

Gene Ontology  (GO ID)

Biological Process

GO:0016358  dendrite development
GO:0006888  ER to Golgi vesicle-mediated transport
GO:0030198  extracellular matrix organization

Cellular Component

GO:0005801  cis-Golgi network
GO:0030425  dendrite
GO:0005783  endoplasmic reticulum
GO:0005795  Golgi stack
GO:0045202  synapse
GO:0008021  synaptic vesicle
GO:0030008  TRAPP complex

Molecular Function

GO:0005515  protein binding