spermatid perinuclear RNA binding protein

 jump to detail

Synonym

SPNR, FLJ14984, spermatid perinuclear RNA-binding protein, STRBP, spermatid perinuclear RNA binding protein, MGC21529, MGC3405, FLJ11307, DKFZp434N214, FLJ14223

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST nodata
GeneChip nodata
CAGE cerebrum:4.08 cerebellum:- brain stem:3.38 corpus callosum/glia:3.07 pineal gland:3.93 peripheral nerve:- spine:3.36 retina:- eye:- artery/aorta:2.62 vein:3.74 lymphnode:3.81 peripheral blood:- spleen:3.71 thymus:4.16 bone marrow:- adipose:2.53 bone:- skin:-
RNA-seq cerebrum:2.74 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:1.22 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:1.26 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST nodata
GeneChip nodata
CAGE uterus:3.06 placenta:2.61 prostate:2.94 ovary:2.83 testis:4.42 heart:2.77 muscle:2.37 esophagus:3.65 stomach:- intestine:3.58 colon:3.52     liver/hepato:2.90    lung:3.30 bladder:3.21 kidney:3.49 pituitary:4.19 thyroid/parathyroid:3.73 adrenal gland:- pancreas:3.52 breast:2.87 salivary:3.91
RNA-seq uterus:- placenta:- prostate:1.55 ovary:1.99 testis:3.78 heart:1.25 muscle:0.84 esophagus:- stomach:- intestine:- colon:2.29     liver/hepato:0.65        lung:0.84    bladder:- kidney:2.43 pituitary:- thyroid/parathyroid:2.77 adrenal gland:2.15 pancreas:- breast:1.74 salivary:-

Gene Information

IDs

Refseq ID NM_018387
Gene ID 55342
Unigene ID -
Probe set ID -
Ensembl ID ENSG00000165209
GTEx ID ENSG00000165209

Orthologous Gene

Mouse[4]  NM_009261
Rat[2]  NM_053416

Chromosomal Region

9q33.3  [125,871,779  -  126,030,855]

Gene Family (Interpro ID)

IPR001159  Double-stranded RNA binding
IPR014720  Double-stranded RNA-binding-like

Link to Pubmed  (Pubmed ID)

7519613
7744952
9674995
10684936
11076863
11230166
11256614
11336498
12477932
14702039
15164053
15489334
15489336
16189514
16381901
19001729
21145461
21890473
21988832
22178446
22391137
22586326
22751105
22939629
24332808
24457600
24778252
24816145

Gene Ontology  (GO ID)

Biological Process

GO:0006928  cellular component movement
GO:0007638  mechanosensory behavior
GO:0007275  multicellular organismal development
GO:0007286  spermatid development

Cellular Component

GO:0005737  cytoplasm
GO:0015630  microtubule cytoskeleton
GO:0005634  nucleus

Molecular Function

GO:0003677  DNA binding
GO:0003725  double-stranded RNA binding
GO:0003727  single-stranded RNA binding