RNA binding motif protein 38

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Synonym

SEB4D, SEB4B, RNA binding motif protein 38, RNA-binding region-containing protein 1, HSRNASEB, RBM38, dJ800J21.2, CLL-associated antigen KW-5, RNPC1, seb4B, ssDNA-binding protein SEB4, SEB4

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:14.20 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:61.30 spine:- retina:118.60 eye:170.40 artery/aorta:- vein:- lymphnode:232.50 peripheral blood:54.70 spleen:75.60 thymus:64.40 bone marrow:98.40 adipose:- bone:25.60 skin:4.80
GeneChip nodata
CAGE cerebrum:2.92 cerebellum:- brain stem:2.89 corpus callosum/glia:3.38 pineal gland:1.67 peripheral nerve:- spine:2.98 retina:- eye:- artery/aorta:3.55 vein:4.19 lymphnode:4.22 peripheral blood:- spleen:4.46 thymus:4.51 bone marrow:- adipose:3.07 bone:- skin:-
RNA-seq cerebrum:0.45 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0.35 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0.00 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:27.30 placenta:3.60 prostate:428 ovary:74.50 testis:30.30 heart:63.90 muscle:20.10 esophagus:- stomach:42.50 intestine:32.40 colon:67.80     liver/hepato:-        lung:48.90    bladder:- kidney:52 pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:106.70 breast:92.90 salivary:-
GeneChip nodata
CAGE uterus:3.79 placenta:3.66 prostate:4.00 ovary:4.27 testis:4.24 heart:4.13 muscle:5.47 esophagus:4.22 stomach:- intestine:3.34 colon:4.12     liver/hepato:3.24    lung:3.75 bladder:4.63 kidney:3.14 pituitary:2.17 thyroid/parathyroid:2.94 adrenal gland:- pancreas:2.71 breast:2.69 salivary:3.84
RNA-seq uterus:- placenta:- prostate:1.02 ovary:1.55 testis:1.56 heart:0.05 muscle:1.55 esophagus:- stomach:- intestine:- colon:2.89     liver/hepato:0.56        lung:1.45    bladder:- kidney:0.21 pituitary:- thyroid/parathyroid:0.99 adrenal gland:0.84 pancreas:- breast:0.73 salivary:-

Gene Information

IDs

Refseq ID NM_183425
Gene ID 55544
Unigene ID Hs.236361
Probe set ID -
Ensembl ID ENSG00000132819
GTEx ID ENSG00000132819

Orthologous Gene

Mouse[1]  NM_019547
Rat[1]  NM_001108965

Chromosomal Region

20q13.31  [55,966,463  -  55,984,389]

Gene Family (Interpro ID)

IPR000504  RNA recognition motif, RNP-1

Link to Pubmed  (Pubmed ID)

11780052
12200376
12477932
15489334
17050675
19285943
19817877
20139978
20339536
20457941
21139048
21764855
21906983
21988832
22027593
22214381
22371495
22508983
22710720
23222517
23300278
23836903
23912475
24142875
24250749

Gene Ontology  (GO ID)

Biological Process

GO:0070935  3'-UTR-mediated mRNA stabilization
GO:0007049  cell cycle
GO:0007050  cell cycle arrest
GO:0030154  cell differentiation
GO:0006977  DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0006978  DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator
GO:0006397  mRNA processing
GO:0008285  negative regulation of cell proliferation
GO:0010830  regulation of myotube differentiation
GO:0043484  regulation of RNA splicing
GO:0008380  RNA splicing

Cellular Component

GO:0005829  cytosol
GO:0005634  nucleus

Molecular Function

GO:0003730  mRNA 3'-UTR binding
GO:0003729  mRNA binding
GO:0000166  nucleotide binding