PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)

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Synonym

PRPF40A, Formin-binding protein 3, FLAF1, FBP11, NY-REN-6 antigen, Huntingtin yeast partner A, FLJ20585, Pre-mRNA-processing factor 40 homolog A, HYPA, Huntingtin-interacting protein HYPA/FBP11, FNBP3, NY-REN-6, FBP-11, HSPC225, formin-binding protein 3, HIP10, formin binding protein 3, Fas ligand-associated factor 1

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:19 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:30.70 spine:- retina:- eye:47 artery/aorta:179.90 vein:- lymphnode:111.20 peripheral blood:54.70 spleen:37.80 thymus:- bone marrow:39.40 adipose:- bone:25.60 skin:43.20
GeneChip cerebrum:6.96 cerebellum:6.77 brain stem:6.99 corpus callosum/glia:7.57 pineal gland:- peripheral nerve:7.45 spine:7.29 retina:- eye:- artery/aorta:7.70 vein:7.67 lymphnode:8.40 peripheral blood:- spleen:8.35 thymus:8.94 bone marrow:8.02 adipose:7.60 bone:- skin:8.09
CAGE cerebrum:3.91 cerebellum:- brain stem:4.15 corpus callosum/glia:3.57 pineal gland:3.95 peripheral nerve:- spine:4.07 retina:- eye:- artery/aorta:3.35 vein:4.07 lymphnode:3.83 peripheral blood:- spleen:4.37 thymus:4.65 bone marrow:- adipose:4.11 bone:- skin:-
RNA-seq cerebrum:3.24 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:3.33 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:3.49 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:63.80 placenta:18.20 prostate:56.30 ovary:- testis:60.60 heart:63.90 muscle:- esophagus:- stomach:42.50 intestine:32.40 colon:42.40     liver/hepato:105.60        lung:83.10    bladder:- kidney:114.40 pituitary:- thyroid/parathyroid:- adrenal gland:50.80 pancreas:97.80 breast:27.90 salivary:-
GeneChip uterus:8.35 placenta:7.98 prostate:8.49 ovary:8.44 testis:7.97 heart:7.41 muscle:7.16 esophagus:7.96 stomach:7.91 intestine:7.65 colon:7.19 liver/hepato:7.93 lung:8.04 bladder:- kidney:7.41 pituitary:7.50 thyroid/parathyroid:8 adrenal gland:7.99 pancreas:6.79 breast:8.19 salivary:7.25
CAGE uterus:4.06 placenta:4.23 prostate:4.17 ovary:4.17 testis:4.40 heart:3.90 muscle:4.25 esophagus:4.24 stomach:- intestine:4.23 colon:3.76     liver/hepato:4.24    lung:4.20 bladder:4.17 kidney:4.20 pituitary:4.24 thyroid/parathyroid:4.05 adrenal gland:- pancreas:3.16 breast:3.47 salivary:3.34
RNA-seq uterus:- placenta:- prostate:3.62 ovary:3.93 testis:4.09 heart:2.78 muscle:3.46 esophagus:- stomach:- intestine:- colon:3.49     liver/hepato:2.92        lung:3.37    bladder:- kidney:3.64 pituitary:- thyroid/parathyroid:4.04 adrenal gland:3.69 pancreas:- breast:3.24 salivary:-

Gene Information

IDs

Refseq ID NM_017892
Gene ID 55660
Unigene ID Hs.643580
Probe set ID 218053_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000196504
GTEx ID ENSG00000196504

Orthologous Gene

Mouse[9]  NM_018785
Rat[1]  NM_001106480

Chromosomal Region

2q23.3  [153,508,107  -  153,574,511]

Gene Family (Interpro ID)

IPR001202  WW/Rsp5/WWP

Link to Pubmed  (Pubmed ID)

8605874
9171351
9700202
9724750
10508479
10744724
11042152
11604498
11741599
12381297
12460579
12477932
12964049
14603323
14618241
14702039
15231748
15302935
15324660
15383276
15456888
15489334
15815621
16055720
16159877
16169070
16391387
16713569
17065151
17081983
17332742
17353931
18029348
18781797
19471022
19946888
20829478
21139048
21145461
21566141
21890473
21900206
21906983
21987572
22113938
22365833
22586326
22939629
22990118
23000965
23125841
23602568
24332808
24457600
24550385
24591637
24654937
24816145

Gene Ontology  (GO ID)

Biological Process

GO:0007049  cell cycle
GO:0051301  cell division
GO:0016477  cell migration
GO:0007010  cytoskeleton organization
GO:0006397  mRNA processing
GO:0008360  regulation of cell shape
GO:0032465  regulation of cytokinesis
GO:0008380  RNA splicing

Cellular Component

GO:0016363  nuclear matrix
GO:0016607  nuclear speck
GO:0005730  nucleolus
GO:0005634  nucleus

Molecular Function

GO:0070064  proline-rich region binding
GO:0005515  protein binding