protocadherin beta 12

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Synonym

protocadherin beta 12, PCDH-beta12, PCDH-BETA12, Protocadherin beta 12 precursor, PCDHB12

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:20.10 cerebellum:37.80 brain stem:- corpus callosum/glia:29.20 pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:18.90 thymus:- bone marrow:- adipose:- bone:12.80 skin:-
GeneChip cerebrum:4.88 cerebellum:5.16 brain stem:4.87 corpus callosum/glia:4.98 pineal gland:- peripheral nerve:4.83 spine:4.77 retina:- eye:- artery/aorta:4.86 vein:5.32 lymphnode:4.68 peripheral blood:- spleen:4.66 thymus:4.41 bone marrow:4.81 adipose:4.92 bone:- skin:4.78
CAGE cerebrum:1.39 cerebellum:- brain stem:1.09 corpus callosum/glia:1.08 pineal gland:0.92 peripheral nerve:- spine:1.42 retina:- eye:- artery/aorta:1.28 vein:0.18 lymphnode:0.49 peripheral blood:- spleen:0.71 thymus:0 bone marrow:- adipose:1.12 bone:- skin:-
RNA-seq cerebrum:0.89 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0.56 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0.99 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:27.30 placenta:- prostate:11.30 ovary:- testis:8.70 heart:- muscle:- esophagus:- stomach:- intestine:- colon:8.50     liver/hepato:-        lung:14.70    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-
GeneChip uterus:5.08 placenta:4.74 prostate:4.73 ovary:4.93 testis:5.17 heart:5.12 muscle:5.12 esophagus:4.73 stomach:4.77 intestine:4.90 colon:4.86 liver/hepato:4.85 lung:4.87 bladder:- kidney:4.83 pituitary:4.96 thyroid/parathyroid:4.69 adrenal gland:4.89 pancreas:4.77 breast:4.70 salivary:4.85
CAGE uterus:1.59 placenta:0.64 prostate:1.36 ovary:1.51 testis:0.77 heart:0.74 muscle:0.46 esophagus:0.73 stomach:- intestine:0.61 colon:0.40     liver/hepato:0.71    lung:0.99 bladder:0.91 kidney:0.39 pituitary:2.46 thyroid/parathyroid:0.60 adrenal gland:- pancreas:0 breast:0.55 salivary:0.36
RNA-seq uterus:- placenta:- prostate:1.14 ovary:1.62 testis:1.08 heart:0.38 muscle:0.13 esophagus:- stomach:- intestine:- colon:0.63     liver/hepato:0.04        lung:1.32    bladder:- kidney:0.64 pituitary:- thyroid/parathyroid:0.68 adrenal gland:1.09 pancreas:- breast:0.92 salivary:-

Gene Information

IDs

Refseq ID NM_018932
Gene ID 56124
Unigene ID Hs.429820
Probe set ID 221408_x_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000120328
GTEx ID ENSG00000120328

Orthologous Gene

Mouse[2]  NM_053144
Rat[2]  NM_053144

Chromosomal Region

5q31.3  [140,588,269  -  140,591,696]

Gene Family (Interpro ID)

IPR002126  Cadherin
IPR015919  Cadherin-like

Link to Pubmed  (Pubmed ID)

10380929
10716726
10817752
10835267
11230163
11322959
12477932
15489334

Gene Ontology  (GO ID)

Biological Process

GO:0007155  cell adhesion
GO:0007156  homophilic cell adhesion
GO:0007399  nervous system development

Cellular Component

GO:0005887  integral to plasma membrane

Molecular Function

GO:0005509  calcium ion binding