vang-like 2 (van gogh, Drosophila)

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Synonym

vang, Strabismus 1, MGC119404, VANGL2, vang-like 2 (van gogh, Drosophila), LTAP, Vang-like protein 2, STBM, Van Gogh-like protein 2, MGC119403, Loop-tail protein 1 homolog, KIAA1215, LPP1, STB1

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:17.80 cerebellum:12.60 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:118.60 eye:58.80 artery/aorta:- vein:- lymphnode:10.10 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:33.60
GeneChip nodata
CAGE cerebrum:2.09 cerebellum:- brain stem:2.15 corpus callosum/glia:2.79 pineal gland:2.72 peripheral nerve:- spine:2.75 retina:- eye:- artery/aorta:1.16 vein:1.57 lymphnode:1.96 peripheral blood:- spleen:1.02 thymus:1.78 bone marrow:- adipose:0.71 bone:- skin:-
RNA-seq cerebrum:1.64 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:1.58 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0.59 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:7.30 prostate:33.80 ovary:37.30 testis:- heart:- muscle:- esophagus:- stomach:- intestine:- colon:33.90     liver/hepato:-        lung:24.40    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:27.90 salivary:-
GeneChip nodata
CAGE uterus:2.41 placenta:1.57 prostate:2.38 ovary:2.57 testis:1.54 heart:1.58 muscle:0.65 esophagus:2.44 stomach:- intestine:2.08 colon:2.12     liver/hepato:0.26    lung:1.67 bladder:1.62 kidney:1.50 pituitary:1.46 thyroid/parathyroid:2.36 adrenal gland:- pancreas:0.94 breast:1.53 salivary:2.31
RNA-seq uterus:- placenta:- prostate:1.95 ovary:2.63 testis:1.76 heart:0.85 muscle:0.17 esophagus:- stomach:- intestine:- colon:1.29     liver/hepato:0.13        lung:2.67    bladder:- kidney:1.06 pituitary:- thyroid/parathyroid:1.93 adrenal gland:2.19 pancreas:- breast:1.24 salivary:-

Gene Information

IDs

Refseq ID NM_020335
Gene ID 57216
Unigene ID Hs.99477
Probe set ID -
Ensembl ID ENSG00000162738
GTEx ID ENSG00000162738

Orthologous Gene

Mouse[2]  NM_033509
Rat[1]  NM_001105969

Chromosomal Region

1q23.2  [160,370,376  -  160,398,468]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

10574462
11431695
12477932
12490194
15195140
15489334
16710414
18034999
18849982
19577357
19734545
20223754
20558380
20738329
21139048
21142127
23579212

Gene Ontology  (GO ID)

Biological Process

GO:0009952  anterior/posterior pattern formation
GO:0045176  apical protein localization
GO:0090103  cochlea morphogenesis
GO:0060028  convergent extension involved in axis elongation
GO:0022007  convergent extension involved in neural plate elongation
GO:0048546  digestive tract morphogenesis
GO:0048105  establishment of body hair planar orientation
GO:0001736  establishment of planar polarity
GO:0090177  establishment of planar polarity involved in neural tube closure
GO:0045197  establishment or maintenance of epithelial cell apical/basal polarity
GO:0032835  glomerulus development
GO:0001942  hair follicle development
GO:0001947  heart looping
GO:0060122  inner ear receptor stereocilium organization
GO:0060490  lateral sprouting involved in lung morphogenesis
GO:0003149  membranous septum morphogenesis
GO:0003150  muscular septum morphogenesis
GO:0001843  neural tube closure
GO:0060488  orthogonal dichotomous subdivision of terminal units involved in lung branching morphogenesis
GO:0003402  planar cell polarity pathway involved in axis elongation
GO:0090179  planar cell polarity pathway involved in neural tube closure
GO:0060489  planar dichotomous subdivision of terminal units involved in lung branching morphogenesis
GO:0043507  positive regulation of JUN kinase activity
GO:0032956  regulation of actin cytoskeleton organization
GO:0007266  Rho protein signal transduction
GO:0035058  sensory cilium assembly
GO:0048103  somatic stem cell division
GO:0035019  somatic stem cell maintenance
GO:0042060  wound healing

Cellular Component

GO:0016324  apical plasma membrane
GO:0016323  basolateral plasma membrane
GO:0060187  cell pole
GO:0005911  cell-cell junction
GO:0016021  integral to membrane
GO:0016328  lateral plasma membrane