retinoblastoma binding protein 4

Synonym

CAF-I p48, Nucleosome remodeling factor subunit RBAP48, RBBP4, CAF-I 48 kDa subunit, RBBP-4, RBAP48, Retinoblastoma-binding protein 4, RbAp48, retinoblastoma binding protein 4, Chromatin assembly factor 1 subunit C, retinoblastoma-binding protein 4, CAF-1 subunit C, NURF55, Chromatin assembly factor I p48 subunit, Histone-binding protein RBBP4, Retinoblastoma-binding protein p48

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:29.60

cerebellum:50.40

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:61.30

spine:-

retina:-

eye:82.30

artery/aorta:60

vein:66.60

lymphnode:70.80

peripheral blood:18.20

spleen:-

thymus:25.80

bone marrow:39.40

adipose:40.30

bone:12.80

skin:38.40

GeneChip

cerebrum:7.54

cerebellum:7.20

brain stem:7.58

corpus callosum/glia:8.16

pineal gland:-

peripheral nerve:7.86

spine:8.28

retina:-

eye:-

artery/aorta:7.27

vein:7.57

lymphnode:8.30

peripheral blood:-

spleen:7.98

thymus:9.82

bone marrow:8.44

adipose:7.81

bone:-

skin:7.36

CAGE

cerebrum:4.38

cerebellum:-

brain stem:4.43

corpus callosum/glia:4.59

pineal gland:5.15

peripheral nerve:-

spine:4.46

retina:-

eye:-

artery/aorta:4.16

vein:4.43

lymphnode:4.46

peripheral blood:-

spleen:4.25

thymus:5.19

bone marrow:-

adipose:4.25

bone:-

skin:-

RNA-seq

cerebrum:0.00

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:0.00

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:0.00

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:36.50

placenta:29.10

prostate:45.10

ovary:-

testis:38.90

heart:63.90

muscle:20.10

esophagus:-

stomach:-

intestine:64.80

colon:59.40

liver/hepato:52.80

lung:48.90

bladder:-

kidney:52

pituitary:-

thyroid/parathyroid:-

adrenal gland:50.80

pancreas:97.80

breast:27.90

salivary:-

GeneChip

uterus:8.49

placenta:8.07

prostate:8.28

ovary:8.75

testis:9.54

heart:7.78

muscle:6.91

esophagus:7.64

stomach:7.87

intestine:8

colon:8.09

liver/hepato:6.94

lung:7.91

bladder:-

kidney:7.74

pituitary:8.27

thyroid/parathyroid:8.35

adrenal gland:7.88

pancreas:7.56

breast:8.19

salivary:8.48

CAGE

uterus:4.30

placenta:4.28

prostate:4.23

ovary:4.49

testis:4.74

heart:4.23

muscle:4.14

esophagus:4.01

stomach:-

intestine:4.10

colon:4.19

liver/hepato:4.09

lung:4.18

bladder:4.14

kidney:4.19

pituitary:4.62

thyroid/parathyroid:4.49

adrenal gland:-

pancreas:4.26

breast:4.20

salivary:4.48

RNA-seq

uterus:-

placenta:-

prostate:0.00

ovary:0.00

testis:0.04

heart:0.27

muscle:0.00

esophagus:-

stomach:-

intestine:-

colon:0.83

liver/hepato:0.31

lung:0.00

bladder:-

kidney:0.24

pituitary:-

thyroid/parathyroid:0.96

adrenal gland:0.03

pancreas:-

breast:0.06

salivary:-

IDs

Refseq ID	NM_001135255
Gene ID	5928
Unigene ID	Hs.16003
Probe set ID	210371_s_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000162521
GTEx ID	ENSG00000162521

Orthologous Gene

Mouse[3]	NM_009030
Rat[3]	NM_009030

Chromosomal Region

1p35.1 [33,116,743 - 33,146,258]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

IPR020472	G-protein beta WD-40 repeat, region
IPR001680	WD40 repeat
IPR019782	WD40 repeat 2
IPR019781	WD40 repeat, subgroup
IPR011046	WD40 repeat-like-containing domain
IPR017986	WD40-repeat-containing domain
IPR015943	WD40/YVTN repeat-like-containing domain

GO:0034080	CenH3-containing nucleosome assembly at centromere
GO:0031497	chromatin assembly
GO:0006338	chromatin remodeling
GO:0006260	DNA replication
GO:0000278	mitotic cell cycle
GO:0008285	negative regulation of cell proliferation
GO:0006334	nucleosome assembly
GO:0006355	regulation of transcription, DNA-dependent
GO:0006351	transcription, DNA-dependent

GO:0033186	CAF-1 complex
GO:0035098	ESC/E(Z) complex
GO:0005654	nucleoplasm
GO:0005634	nucleus
GO:0016581	NuRD complex
GO:0016589	NURF complex
GO:0016580	Sin3 complex

GO:0008094	DNA-dependent ATPase activity
GO:0042393	histone binding
GO:0042826	histone deacetylase binding
GO:0005515	protein binding

retinoblastoma binding protein 4

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function