RNA binding motif, single stranded interacting protein 1

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Synonym

MGC3331, MSSP-1, Suppressor of CDC2 with RNA-binding motif 2, RBMS1, MSSP, YC1, Single-stranded DNA-binding protein MSSP-1, MGC15146, MSSP-3, SCR2, MSSP-2, MSSP1

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:29.60 cerebellum:- brain stem:- corpus callosum/glia:29.20 pineal gland:148.30 peripheral nerve:153.40 spine:224.60 retina:237.30 eye:35.30 artery/aorta:89.90 vein:- lymphnode:121.30 peripheral blood:54.70 spleen:56.70 thymus:141.70 bone marrow:177.10 adipose:161.30 bone:64 skin:153.60
GeneChip cerebrum:6.35 cerebellum:5.68 brain stem:6.73 corpus callosum/glia:6.10 pineal gland:- peripheral nerve:8.27 spine:6.71 retina:- eye:- artery/aorta:8.22 vein:8.52 lymphnode:7.73 peripheral blood:- spleen:8.38 thymus:7.63 bone marrow:7.85 adipose:8.64 bone:- skin:8.10
CAGE cerebrum:2.28 cerebellum:- brain stem:2.39 corpus callosum/glia:1.91 pineal gland:2.78 peripheral nerve:- spine:2.57 retina:- eye:- artery/aorta:3.78 vein:3.58 lymphnode:3.30 peripheral blood:- spleen:3.66 thymus:2.99 bone marrow:- adipose:4.16 bone:- skin:-
RNA-seq cerebrum:0.63 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:2.27 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0.92 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:227.80 placenta:324.20 prostate:78.90 ovary:111.80 testis:34.60 heart:153.30 muscle:60.30 esophagus:- stomach:977.10 intestine:- colon:93.30     liver/hepato:126.70        lung:200.40    bladder:- kidney:197.50 pituitary:- thyroid/parathyroid:- adrenal gland:50.80 pancreas:80 breast:102.20 salivary:-
GeneChip uterus:8.66 placenta:9.51 prostate:7.71 ovary:8.52 testis:6.58 heart:8.56 muscle:6.92 esophagus:8.39 stomach:7.65 intestine:7.37 colon:7.29 liver/hepato:7.11 lung:8.54 bladder:- kidney:7.62 pituitary:6.90 thyroid/parathyroid:7.42 adrenal gland:7.56 pancreas:6.74 breast:8.42 salivary:6.93
CAGE uterus:4.21 placenta:5.14 prostate:3.80 ovary:3.82 testis:2.64 heart:4.15 muscle:2.65 esophagus:3.59 stomach:- intestine:2.85 colon:3.33     liver/hepato:2.69    lung:4.01 bladder:3.96 kidney:3.60 pituitary:3.47 thyroid/parathyroid:2.99 adrenal gland:- pancreas:2.26 breast:3.93 salivary:2.95
RNA-seq uterus:- placenta:- prostate:0.94 ovary:0.71 testis:0.84 heart:0.65 muscle:0.00 esophagus:- stomach:- intestine:- colon:1.81     liver/hepato:0.00        lung:1.34    bladder:- kidney:0.75 pituitary:- thyroid/parathyroid:0.00 adrenal gland:0.74 pancreas:- breast:1.43 salivary:-

Gene Information

IDs

Refseq ID NM_016836
Gene ID 5937
Unigene ID Hs.470412
Probe set ID 203748_x_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000153250
GTEx ID ENSG00000153250

Orthologous Gene

Mouse[4]  NM_001141931, NM_001141932, NM_020296
Rat[1]  NM_001012184, NM_001141932, NM_020296

Chromosomal Region

2q24.2  [161,128,662  -  161,350,305]

Gene Family (Interpro ID)

IPR002343  Paraneoplastic encephalomyelitis antigen
IPR000504  RNA recognition motif, RNP-1

Link to Pubmed  (Pubmed ID)

7838710
8041632
8125298
8134115
8871567
10869558
12477932
14702039
15146197
15489334
15815621
17207965
19451621
20379614
20418489
20889853
21139048
21323541
21890473
22505724
22939629
22952844
23000965

Gene Ontology  (GO ID)

Biological Process

GO:0006260  DNA replication
GO:0006396  RNA processing

Cellular Component

GO:0005634  nucleus

Molecular Function

GO:0003690  double-stranded DNA binding
GO:0000166  nucleotide binding
GO:0005515  protein binding
GO:0003723  RNA binding
GO:0003697  single-stranded DNA binding