short coiled-coil protein

 jump to detail

Synonym

short coiled-coil protein, HRIHFB2072, short coiled coil protein, SCOC, SCOCO

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:307 cerebellum:428.20 brain stem:- corpus callosum/glia:87.50 pineal gland:- peripheral nerve:122.70 spine:336.90 retina:- eye:82.30 artery/aorta:119.90 vein:66.60 lymphnode:161.80 peripheral blood:72.90 spleen:18.90 thymus:90.20 bone marrow:19.70 adipose:80.70 bone:38.40 skin:100.80
GeneChip nodata
CAGE cerebrum:4.63 cerebellum:- brain stem:5.11 corpus callosum/glia:4.39 pineal gland:4.77 peripheral nerve:- spine:5.00 retina:- eye:- artery/aorta:3.44 vein:2.91 lymphnode:3.06 peripheral blood:- spleen:3.40 thymus:2.83 bone marrow:- adipose:3.80 bone:- skin:-
RNA-seq cerebrum:0.85 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0.65 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:1.18 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:164 placenta:134.80 prostate:180.20 ovary:37.30 testis:121.10 heart:229.90 muscle:80.40 esophagus:- stomach:106.20 intestine:259.20 colon:59.40     liver/hepato:42.20        lung:92.90    bladder:628.10 kidney:207.90 pituitary:463.90 thyroid/parathyroid:- adrenal gland:203.10 pancreas:231.20 breast:37.20 salivary:-
GeneChip nodata
CAGE uterus:3.63 placenta:3.66 prostate:3.96 ovary:3.71 testis:3.38 heart:3.74 muscle:3.23 esophagus:4.02 stomach:- intestine:3.92 colon:3.16     liver/hepato:3.99    lung:3.66 bladder:3.88 kidney:4.56 pituitary:4.61 thyroid/parathyroid:4.00 adrenal gland:- pancreas:4.02 breast:3.24 salivary:3.66
RNA-seq uterus:- placenta:- prostate:1.86 ovary:0.00 testis:0.00 heart:0.22 muscle:0.00 esophagus:- stomach:- intestine:- colon:0.00     liver/hepato:1.34        lung:1.97    bladder:- kidney:1.41 pituitary:- thyroid/parathyroid:1.65 adrenal gland:1.61 pancreas:- breast:1.98 salivary:-

Gene Information

IDs

Refseq ID NM_001153663
Gene ID 60592
Unigene ID Hs.480815
Probe set ID -
Ensembl ID ENSG00000153130
GTEx ID ENSG00000153130

Orthologous Gene

Mouse[4]  NM_001039137, NM_019708
Rat[1]  NM_001013235, NM_019708

Chromosomal Region

4q31.1  [141,178,440  -  141,303,710]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

11303027
12477932
14702039
15146197
16344560
16484223
17207965
20195357
20379614
21139048
21988832
22354037
22558309
24250222

Gene Ontology  (GO ID)

Biological Process

GO:0016239  positive regulation of macroautophagy

Cellular Component

GO:0005829  cytosol
GO:0005768  endosome
GO:0000139  Golgi membrane
GO:0005802  trans-Golgi network

Molecular Function

GO:0005515  protein binding