splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated)

Synonym

POMP100, SFPQ, PTB-associated-splicing factor, DNA-binding p52/p100 complex, 100 kDa subunit, hPOMp100, Splicing factor, proline- and glutamine-rich, 100 kDa DNA-pairing protein

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:162.40

cerebellum:63

brain stem:-

corpus callosum/glia:29.20

pineal gland:148.30

peripheral nerve:337.40

spine:224.60

retina:118.60

eye:146.90

artery/aorta:89.90

vein:-

lymphnode:262.90

peripheral blood:54.70

spleen:56.70

thymus:141.70

bone marrow:472.30

adipose:121

bone:64

skin:326.40

GeneChip

cerebrum:7.85

cerebellum:8.14

brain stem:7.70

corpus callosum/glia:8.40

pineal gland:-

peripheral nerve:8.11

spine:8.18

retina:-

eye:-

artery/aorta:7.77

vein:7.82

lymphnode:8.73

peripheral blood:-

spleen:8.67

thymus:9.97

bone marrow:8.56

adipose:8.22

bone:-

skin:8.44

CAGE

cerebrum:5.84

cerebellum:-

brain stem:5.64

corpus callosum/glia:5.95

pineal gland:6.12

peripheral nerve:-

spine:5.92

retina:-

eye:-

artery/aorta:6.10

vein:5.90

lymphnode:6.17

peripheral blood:-

spleen:5.99

thymus:6.65

bone marrow:-

adipose:5.76

bone:-

skin:-

RNA-seq

cerebrum:5.18

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:5.84

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:5.42

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:182.30

placenta:138.40

prostate:157.70

ovary:37.30

testis:112.50

heart:357.60

muscle:40.20

esophagus:-

stomach:424.80

intestine:97.20

colon:245.90

liver/hepato:232.20

lung:132

bladder:125.60

kidney:187.10

pituitary:347.90

thyroid/parathyroid:-

adrenal gland:304.70

pancreas:213.40

breast:473.90

salivary:-

GeneChip

uterus:8.68

placenta:8.74

prostate:8.89

ovary:8.80

testis:8.59

heart:7.77

muscle:7.44

esophagus:8.53

stomach:8.28

intestine:8.10

colon:8.35

liver/hepato:7.69

lung:8.66

bladder:-

kidney:8.16

pituitary:7.67

thyroid/parathyroid:8.28

adrenal gland:8.31

pancreas:7.41

breast:8.60

salivary:8

CAGE

uterus:5.96

placenta:5.77

prostate:5.93

ovary:6.02

testis:6.01

heart:5.91

muscle:5.65

esophagus:5.61

stomach:-

intestine:5.76

colon:5.92

liver/hepato:5.54

lung:5.99

bladder:5.68

kidney:5.84

pituitary:5.90

thyroid/parathyroid:5.47

adrenal gland:-

pancreas:5.47

breast:6.22

salivary:5.71

RNA-seq

uterus:-

placenta:-

prostate:5.83

ovary:6.75

testis:6.55

heart:4.62

muscle:5.40

esophagus:-

stomach:-

intestine:-

colon:5.02

liver/hepato:4.13

lung:4.49

bladder:-

kidney:6.04

pituitary:-

thyroid/parathyroid:6.17

adrenal gland:5.99

pancreas:-

breast:5.60

salivary:-

IDs

Refseq ID	NM_005066
Gene ID	6421
Unigene ID	Hs.355934
Probe set ID	201586_s_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000116560
GTEx ID	ENSG00000116560

Orthologous Gene

Mouse[4]	NM_023603
Rat[2]	NM_001025271

Chromosomal Region

1p34.3 [35,641,979 - 35,658,749]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

IPR000504

RNA recognition motif, RNP-1

Gene Ontology (GO ID)

Biological Process

GO:0000380	alternative nuclear mRNA splicing, via spliceosome
GO:0006310	DNA recombination
GO:0006281	DNA repair
GO:0006397	mRNA processing
GO:0000122	negative regulation of transcription from RNA polymerase II promoter
GO:0008380	RNA splicing
GO:0006351	transcription, DNA-dependent

Cellular Component

GO:0005737	cytoplasm
GO:0016363	nuclear matrix
GO:0005654	nucleoplasm
GO:0042382	paraspeckles

Molecular Function

GO:0003677	DNA binding
GO:0000166	nucleotide binding
GO:0005515	protein binding
GO:0003723	RNA binding

splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated)

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function