splicing factor, arginine/serine-rich 5

Synonym

splicing factor, arginine/serine-rich 5, SRP40, Splicing factor, arginine/serine-rich 5, Pre-mRNA-splicing factor SRP40, SFRS5, Delayed-early protein HRS

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:276.10

cerebellum:75.60

brain stem:-

corpus callosum/glia:116.60

pineal gland:-

peripheral nerve:368.10

spine:224.60

retina:-

eye:276.20

artery/aorta:89.90

vein:-

lymphnode:182

peripheral blood:127.50

spleen:189.10

thymus:863.20

bone marrow:137.80

adipose:322.70

bone:243.10

skin:144

GeneChip

cerebrum:9.51

cerebellum:10.01

brain stem:9.58

corpus callosum/glia:10.13

pineal gland:-

peripheral nerve:9.28

spine:9.63

retina:-

eye:-

artery/aorta:9.55

vein:9.21

lymphnode:10.28

peripheral blood:-

spleen:10.47

thymus:10.73

bone marrow:9.44

adipose:9.85

bone:-

skin:10.07

CAGE

cerebrum:6.22

cerebellum:-

brain stem:6.16

corpus callosum/glia:6.10

pineal gland:6.76

peripheral nerve:-

spine:6.38

retina:-

eye:-

artery/aorta:5.92

vein:5.82

lymphnode:5.77

peripheral blood:-

spleen:5.64

thymus:5.55

bone marrow:-

adipose:5.19

bone:-

skin:-

RNA-seq

cerebrum:7.13

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:5.68

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:6.15

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:346.30

placenta:404.40

prostate:202.80

ovary:186.30

testis:255.30

heart:114.90

muscle:80.40

esophagus:-

stomach:63.70

intestine:324

colon:93.30

liver/hepato:232.20

lung:171.10

bladder:125.60

kidney:93.60

pituitary:1043.80

thyroid/parathyroid:-

adrenal gland:203.10

pancreas:249

breast:241.60

salivary:-

GeneChip

uterus:10.17

placenta:10.38

prostate:10.68

ovary:10.35

testis:9.46

heart:9.12

muscle:8.89

esophagus:10.30

stomach:9.80

intestine:9.46

colon:9.59

liver/hepato:9.65

lung:9.91

bladder:-

kidney:9.55

pituitary:10.36

thyroid/parathyroid:10.20

adrenal gland:9.81

pancreas:8.22

breast:9.91

salivary:9.54

CAGE

uterus:5.97

placenta:5.88

prostate:5.41

ovary:5.44

testis:5.38

heart:5.56

muscle:5.67

esophagus:5.32

stomach:-

intestine:5.96

colon:5.78

liver/hepato:5.32

lung:5.65

bladder:5.50

kidney:5.37

pituitary:6.73

thyroid/parathyroid:5.04

adrenal gland:-

pancreas:5.18

breast:5.15

salivary:5.80

RNA-seq

uterus:-

placenta:-

prostate:6.04

ovary:6.97

testis:5.53

heart:5.36

muscle:3.44

esophagus:-

stomach:-

intestine:-

colon:4.20

liver/hepato:5.74

lung:5.59

bladder:-

kidney:5.89

pituitary:-

thyroid/parathyroid:7.78

adrenal gland:7.42

pancreas:-

breast:6.58

salivary:-

IDs

Refseq ID	NM_006925
Gene ID	6430
Unigene ID	Hs.632326
Probe set ID	212266_s_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000100650
GTEx ID	ENSG00000100650

Orthologous Gene

Mouse[3]	NM_001079694, NM_001079695, NM_009159
Rat [0]

Chromosomal Region

14q24.1 [70,193,617 - 70,238,722]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

IPR000504

RNA recognition motif, RNP-1

GO:0010467	gene expression
GO:0031124	mRNA 3'-end processing
GO:0006406	mRNA export from nucleus
GO:0006397	mRNA processing
GO:0006376	mRNA splice site selection
GO:0000398	nuclear mRNA splicing, via spliceosome
GO:0051726	regulation of cell cycle
GO:0009611	response to wounding
GO:0008380	RNA splicing
GO:0006369	termination of RNA polymerase II transcription
GO:0006366	transcription from RNA polymerase II promoter

GO:0005737	cytoplasm
GO:0016607	nuclear speck
GO:0005730	nucleolus
GO:0005654	nucleoplasm
GO:0005634	nucleus

GO:0000166	nucleotide binding
GO:0005515	protein binding
GO:0003723	RNA binding
GO:0050733	RS domain binding

splicing factor, arginine/serine-rich 5

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function