UPF3 regulator of nonsense transcripts homolog A (yeast)

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Synonym

Up-frameshift suppressor 3 homolog A, Regulator of nonsense transcripts 3A, UPF3A, Nonsense mRNA reducing factor 3A, HUPF3A, UPF3, RENT3A, hUpf3

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:36.70 cerebellum:63 brain stem:- corpus callosum/glia:- pineal gland:296.70 peripheral nerve:30.70 spine:- retina:- eye:76.40 artery/aorta:- vein:- lymphnode:101.10 peripheral blood:- spleen:56.70 thymus:- bone marrow:- adipose:- bone:76.80 skin:91.20
GeneChip cerebrum:8.29 cerebellum:8.82 brain stem:8.46 corpus callosum/glia:8.94 pineal gland:- peripheral nerve:7.75 spine:8.77 retina:- eye:- artery/aorta:7.72 vein:7.49 lymphnode:8.36 peripheral blood:- spleen:8.34 thymus:9.08 bone marrow:7.31 adipose:8.10 bone:- skin:7.87
CAGE cerebrum:2.87 cerebellum:- brain stem:2.89 corpus callosum/glia:2.88 pineal gland:2.90 peripheral nerve:- spine:2.74 retina:- eye:- artery/aorta:2.00 vein:2.27 lymphnode:1.96 peripheral blood:- spleen:1.83 thymus:2.18 bone marrow:- adipose:1.57 bone:- skin:-
RNA-seq cerebrum:0.00 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:2.35 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0.00 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:18.20 placenta:43.70 prostate:78.90 ovary:37.30 testis:151.40 heart:76.60 muscle:- esophagus:- stomach:21.20 intestine:64.80 colon:42.40     liver/hepato:42.20        lung:68.40    bladder:- kidney:20.80 pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:71.10 breast:9.30 salivary:-
GeneChip uterus:8.53 placenta:7.77 prostate:8.56 ovary:8.39 testis:9.56 heart:7.11 muscle:7.61 esophagus:8.04 stomach:8.03 intestine:7.53 colon:6.80 liver/hepato:7.84 lung:7.83 bladder:- kidney:7.72 pituitary:8.23 thyroid/parathyroid:9.16 adrenal gland:8.13 pancreas:7.23 breast:8.05 salivary:7.28
CAGE uterus:2.35 placenta:2.05 prostate:2.22 ovary:2.17 testis:2.92 heart:1.86 muscle:2.25 esophagus:1.80 stomach:- intestine:1.90 colon:2.20     liver/hepato:1.37    lung:1.89 bladder:1.76 kidney:2.07 pituitary:2.22 thyroid/parathyroid:2.49 adrenal gland:- pancreas:1.98 breast:2.34 salivary:1.82
RNA-seq uterus:- placenta:- prostate:0.56 ovary:2.80 testis:0.22 heart:0.00 muscle:0.00 esophagus:- stomach:- intestine:- colon:0.66     liver/hepato:0.52        lung:0.81    bladder:- kidney:1.04 pituitary:- thyroid/parathyroid:0.30 adrenal gland:0.31 pancreas:- breast:1.87 salivary:-

Gene Information

IDs

Refseq ID NM_080687
Gene ID 65110
Unigene ID Hs.533855
Probe set ID 214323_s_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000169062
GTEx ID ENSG00000169062

Orthologous Gene

Mouse[1]  NM_025924
Rat[1]  NM_001012159

Chromosomal Region

13q34  [115,047,059  -  115,071,283]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

11113196
11163187
11544179
11546873
11546874
12417715
12477932
12554878
12723973
14527413
14636577
14702039
15004547
15057823
15231747
15489334
16169070
16452507
16601204
17704778
17803295
17803942
18029348
19503078
21145460
21832049
23275563

Gene Ontology  (GO ID)

Biological Process

GO:0010467  gene expression
GO:0016071  mRNA metabolic process
GO:0051028  mRNA transport
GO:0000184  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0006913  nucleocytoplasmic transport
GO:0045727  positive regulation of translation
GO:0016070  RNA metabolic process

Cellular Component

GO:0005737  cytoplasm
GO:0005829  cytosol
GO:0035145  exon-exon junction complex
GO:0005730  nucleolus
GO:0005634  nucleus
GO:0005886  plasma membrane

Molecular Function

GO:0005487  nucleocytoplasmic transporter activity
GO:0000166  nucleotide binding
GO:0005515  protein binding
GO:0003723  RNA binding