SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2

Synonym

Sth1p, SNF2L2, ATP-dependent helicase SMARCA2, SNF2A, BAF190, SMARCA2, FLJ36757, BRM, MGC74511, Probable global transcription activator SNF2L2, hBRM, SNF2LA, hSNF2a, SNF2-alpha

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:94.80

cerebellum:37.80

brain stem:-

corpus callosum/glia:29.20

pineal gland:148.30

peripheral nerve:122.70

spine:-

retina:237.30

eye:182.20

artery/aorta:30

vein:-

lymphnode:182

peripheral blood:-

spleen:75.60

thymus:103.10

bone marrow:59

adipose:201.70

bone:38.40

skin:100.80

GeneChip

cerebrum:7.36

cerebellum:7.48

brain stem:7.16

corpus callosum/glia:6.67

pineal gland:-

peripheral nerve:7.17

spine:7.10

retina:-

eye:-

artery/aorta:7.30

vein:7.25

lymphnode:7.35

peripheral blood:-

spleen:7.45

thymus:7.30

bone marrow:6.49

adipose:7.38

bone:-

skin:7.16

CAGE

cerebrum:4.34

cerebellum:-

brain stem:4.07

corpus callosum/glia:3.96

pineal gland:4.04

peripheral nerve:-

spine:4.11

retina:-

eye:-

artery/aorta:4.37

vein:4.10

lymphnode:4.02

peripheral blood:-

spleen:3.94

thymus:3.69

bone marrow:-

adipose:3.97

bone:-

skin:-

RNA-seq

cerebrum:4.90

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:4.08

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:4.07

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:91.10

placenta:94.70

prostate:146.40

ovary:298.10

testis:82.20

heart:178.80

muscle:60.30

esophagus:-

stomach:85

intestine:32.40

colon:76.30

liver/hepato:52.80

lung:83.10

bladder:-

kidney:104

pituitary:232

thyroid/parathyroid:-

adrenal gland:-

pancreas:142.30

breast:223

salivary:-

GeneChip

uterus:7.70

placenta:6.87

prostate:7.80

ovary:8.32

testis:8.22

heart:7.04

muscle:7.97

esophagus:6.94

stomach:6.81

intestine:6.67

colon:6.11

liver/hepato:6.64

lung:7.21

bladder:-

kidney:6.96

pituitary:7.96

thyroid/parathyroid:7.77

adrenal gland:7.39

pancreas:6.18

breast:7.75

salivary:7.35

CAGE

uterus:4.24

placenta:3.88

prostate:4.06

ovary:4.76

testis:4.31

heart:3.82

muscle:3.83

esophagus:3.94

stomach:-

intestine:3.65

colon:3.50

liver/hepato:3.24

lung:3.96

bladder:4.07

kidney:3.56

pituitary:4.46

thyroid/parathyroid:3.75

adrenal gland:-

pancreas:3.34

breast:4.00

salivary:4.08

RNA-seq

uterus:-

placenta:-

prostate:4.87

ovary:5.93

testis:5.39

heart:3.67

muscle:3.45

esophagus:-

stomach:-

intestine:-

colon:4.44

liver/hepato:2.58

lung:3.90

bladder:-

kidney:4.31

pituitary:-

thyroid/parathyroid:4.78

adrenal gland:4.06

pancreas:-

breast:4.91

salivary:-

IDs

Refseq ID	NM_139045
Gene ID	6595
Unigene ID	Hs.298990
Probe set ID	206542_s_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000080503
GTEx ID	ENSG00000080503

Orthologous Gene

Mouse[3]	NM_011416, NM_026003
Rat[1]	NM_001004446, NM_026003

Chromosomal Region

9p24.3 [2,015,342 - 2,193,624]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

IPR014001	DEAD-like helicase, N-terminal
IPR013999	HAS subgroup
IPR014021	Helicase, superfamily 1/2, ATP-binding domain
IPR014012	Helicase/SANT-associated, DNA binding
IPR006562	HSA

Gene Ontology (GO ID)

Biological Process

GO:0006338	chromatin remodeling
GO:0030308	negative regulation of cell growth
GO:0008285	negative regulation of cell proliferation
GO:0000122	negative regulation of transcription from RNA polymerase II promoter
GO:0045892	negative regulation of transcription, DNA-dependent
GO:0007399	nervous system development
GO:0045944	positive regulation of transcription from RNA polymerase II promoter
GO:0045893	positive regulation of transcription, DNA-dependent
GO:0006357	regulation of transcription from RNA polymerase II promoter
GO:0006355	regulation of transcription, DNA-dependent

Cellular Component

GO:0045111	intermediate filament cytoskeleton
GO:0043231	intracellular membrane-bounded organelle
GO:0000790	nuclear chromatin
GO:0005730	nucleolus
GO:0005654	nucleoplasm
GO:0005634	nucleus
GO:0016514	SWI/SNF complex

Molecular Function

GO:0005524	ATP binding
GO:0044212	DNA regulatory region binding
GO:0008094	DNA-dependent ATPase activity
GO:0004386	helicase activity
GO:0005515	protein binding
GO:0003713	transcription coactivator activity

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function