small nuclear ribonucleoprotein polypeptide N

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Synonym

Sm protein N, SNURF-SNRPN, HCERN3, Tissue-specific-splicing protein, Sm-N, small nuclear ribonucleoprotein polypeptide N, RT-LI, SNRPN, SM-D, snRNP-N, Sm-D, SNRNP-N, SmN

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:395.80 cerebellum:466 brain stem:- corpus callosum/glia:87.50 pineal gland:148.30 peripheral nerve:184 spine:673.80 retina:711.80 eye:199.80 artery/aorta:89.90 vein:133.30 lymphnode:141.50 peripheral blood:72.90 spleen:56.70 thymus:51.50 bone marrow:137.80 adipose:80.70 bone:38.40 skin:129.60
GeneChip cerebrum:11.27 cerebellum:11.53 brain stem:11.39 corpus callosum/glia:9.99 pineal gland:- peripheral nerve:10.47 spine:10.68 retina:- eye:- artery/aorta:9.48 vein:9.39 lymphnode:9.26 peripheral blood:- spleen:9.38 thymus:9.57 bone marrow:7.77 adipose:8.22 bone:- skin:8.02
CAGE cerebrum:5.12 cerebellum:- brain stem:4.29 corpus callosum/glia:3.72 pineal gland:4.42 peripheral nerve:- spine:4.49 retina:- eye:- artery/aorta:3.57 vein:2.71 lymphnode:1.88 peripheral blood:- spleen:1.56 thymus:2.34 bone marrow:- adipose:1.74 bone:- skin:-
RNA-seq cerebrum:8.00 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:6.24 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:4.34 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:45.60 placenta:40.10 prostate:135.20 ovary:223.60 testis:82.20 heart:242.70 muscle:361.60 esophagus:- stomach:- intestine:- colon:84.80     liver/hepato:158.30        lung:73.30    bladder:376.80 kidney:145.60 pituitary:579.90 thyroid/parathyroid:327.50 adrenal gland:101.60 pancreas:435.70 breast:111.50 salivary:-
GeneChip uterus:9.06 placenta:7.35 prostate:10.45 ovary:9.75 testis:9.26 heart:10.09 muscle:9.51 esophagus:8.49 stomach:8.98 intestine:9.04 colon:8.34 liver/hepato:8.21 lung:9.07 bladder:- kidney:10.19 pituitary:11.21 thyroid/parathyroid:10.92 adrenal gland:9.74 pancreas:8.85 breast:8.75 salivary:9.72
CAGE uterus:2.65 placenta:1.11 prostate:3.04 ovary:2.65 testis:3.28 heart:3.60 muscle:2.34 esophagus:1.75 stomach:- intestine:1.70 colon:1.71     liver/hepato:1.29    lung:2.06 bladder:2.39 kidney:2.53 pituitary:4.29 thyroid/parathyroid:3.52 adrenal gland:- pancreas:2.48 breast:1.68 salivary:1.95
RNA-seq uterus:- placenta:- prostate:6.61 ovary:6.84 testis:6.21 heart:7.14 muscle:4.14 esophagus:- stomach:- intestine:- colon:5.82     liver/hepato:4.48        lung:6.14    bladder:- kidney:6.83 pituitary:- thyroid/parathyroid:8.11 adrenal gland:5.89 pancreas:- breast:4.98 salivary:-

Gene Information

IDs

Refseq ID NM_003097
Gene ID 6638
Unigene ID Hs.564847
Probe set ID 201522_x_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000128739
ENSG00000214265
GTEx ID ENSG00000128739
ENSG00000214265

Orthologous Gene

Mouse[16]  NM_001082961, NM_001082962, NM_013670, NM_033174
Rat [0]  

Chromosomal Region

15q11.2  [25,068,794  -  25,223,870]

Gene Family (Interpro ID)

IPR001163  Like-Sm ribonucleoprotein (LSM) domain
IPR006649  Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type
IPR017131  Small ribonucleoprotein associated, SmB/SmN

Link to Pubmed  (Pubmed ID)

1303277
1533223
2522186
2522449
2528429
2753153
7512861
7849716
8125298
8363612
8571960
8841186
8845846
9070929
9417867
9590284
9915945
9931342
10318933
10556313
10725331
11106375
11149922
11159938
11317358
11713266
11726556
12045206
12244096
12456665
12477932
14500540
14702039
14715275
15014980
15105431
15489334
15565282
15939761
16116039
16169070
16357227
17262171
17353931
17361185
17643375
17903307
18361419
18362360
18627066
18662664
18951082
18984161
19595458
20301505
20301615
20467438
20582452
21227640
21233802
21890473
21906983
21988832
22190034
22505724
22711311
23000965
23040914
23251661
24024966
24457600
24657165
24722188
24816145

Gene Ontology  (GO ID)

Biological Process

GO:0009725  response to hormone stimulus
GO:0008380  RNA splicing

Cellular Component

GO:0030532  small nuclear ribonucleoprotein complex
GO:0005681  spliceosomal complex
GO:0005685  U1 snRNP
GO:0005686  U2 snRNP

Molecular Function

GO:0005515  protein binding
GO:0003723  RNA binding