syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)

 jump to detail

Synonym

A1B, MGC111389, SNT2B1, SNT2, FLJ22442, DAPA1B, 59-DAP, TIP-43, BSYN2, Beta-1-syntrophin, SNTB1, Tax interaction protein 43, Syntrophin 2

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:10.70 cerebellum:25.20 brain stem:- corpus callosum/glia:- pineal gland:148.30 peripheral nerve:- spine:- retina:- eye:35.30 artery/aorta:- vein:- lymphnode:20.20 peripheral blood:- spleen:18.90 thymus:12.90 bone marrow:- adipose:- bone:25.60 skin:38.40
GeneChip cerebrum:4.21 cerebellum:4.15 brain stem:4.14 corpus callosum/glia:4.35 pineal gland:- peripheral nerve:4.25 spine:4.34 retina:- eye:- artery/aorta:4.20 vein:4.27 lymphnode:4.02 peripheral blood:- spleen:3.98 thymus:4.03 bone marrow:4.62 adipose:4.44 bone:- skin:4.28
CAGE cerebrum:2.05 cerebellum:- brain stem:2.19 corpus callosum/glia:2.60 pineal gland:2.97 peripheral nerve:- spine:2.24 retina:- eye:- artery/aorta:2.24 vein:2.40 lymphnode:2.53 peripheral blood:- spleen:3.24 thymus:2.11 bone marrow:- adipose:2.87 bone:- skin:-
RNA-seq cerebrum:2.21 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:2.58 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:2.85 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:27.30 placenta:32.80 prostate:11.30 ovary:- testis:26 heart:51.10 muscle:20.10 esophagus:- stomach:21.20 intestine:- colon:59.40     liver/hepato:105.60        lung:34.20    bladder:- kidney:52 pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:18.60 salivary:-
GeneChip uterus:4.14 placenta:4.27 prostate:3.81 ovary:4.08 testis:3.89 heart:4.20 muscle:4.25 esophagus:4.30 stomach:4.48 intestine:4.80 colon:4.16 liver/hepato:4.73 lung:4.19 bladder:- kidney:4.34 pituitary:4.09 thyroid/parathyroid:4.56 adrenal gland:4.79 pancreas:4.91 breast:3.96 salivary:4.76
CAGE uterus:2.48 placenta:2.20 prostate:2.39 ovary:1.98 testis:1.83 heart:2.22 muscle:2.54 esophagus:2.99 stomach:- intestine:2.25 colon:2.28     liver/hepato:4.63    lung:3.80 bladder:2.51 kidney:2.47 pituitary:1.35 thyroid/parathyroid:4.33 adrenal gland:- pancreas:3.84 breast:3.45 salivary:3.84
RNA-seq uterus:- placenta:- prostate:2.50 ovary:1.79 testis:2.67 heart:1.24 muscle:2.48 esophagus:- stomach:- intestine:- colon:2.98     liver/hepato:5.46        lung:3.51    bladder:- kidney:2.81 pituitary:- thyroid/parathyroid:4.77 adrenal gland:2.50 pancreas:- breast:2.75 salivary:-

Gene Information

IDs

Refseq ID NM_021021
Gene ID 6641
Unigene ID Hs.46701
Probe set ID 208608_s_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000172164
GTEx ID ENSG00000172164

Orthologous Gene

Mouse[2]  NM_016667
Rat [0]  

Chromosomal Region

8q24.12  [121,547,985  -  121,825,513]

Gene Family (Interpro ID)

IPR001849  Pleckstrin homology

Link to Pubmed  (Pubmed ID)

7844150
8119949
8183929
8576247
9412493
9482110
10212242
10545507
11069112
11168526
11352924
12136098
12477932
12665801
15024025
15489334
16192269
16192270
16192292
16533813
18468998
19343720
20208534
20889312
22721673
23406873
23782696
23933737
24024966
24255178
24816145

Gene Ontology  (GO ID)

Biological Process

GO:0006936  muscle contraction

Cellular Component

GO:0030054  cell junction
GO:0005737  cytoplasm
GO:0005856  cytoskeleton
GO:0016010  dystrophin-associated glycoprotein complex
GO:0043234  protein complex
GO:0042383  sarcolemma
GO:0045202  synapse

Molecular Function

GO:0003779  actin binding
GO:0005516  calmodulin binding
GO:0030165  PDZ domain binding
GO:0005543  phospholipid binding
GO:0005515  protein binding