vesicle-associated membrane protein 7

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Synonym

VAMP-7, TI-VAMP, Ti-VAMP/VAMP7, Ti-VAMP, synaptobrevin-like 1, Synaptobrevin-like protein 1, Tetanus insensitive VAMP, VAMP7, SYBL1

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:60.40 cerebellum:12.60 brain stem:- corpus callosum/glia:204.10 pineal gland:- peripheral nerve:- spine:- retina:- eye:17.60 artery/aorta:209.80 vein:133.30 lymphnode:20.20 peripheral blood:18.20 spleen:37.80 thymus:51.50 bone marrow:19.70 adipose:121 bone:12.80 skin:48
GeneChip cerebrum:7.47 cerebellum:6.70 brain stem:7.89 corpus callosum/glia:7.86 pineal gland:- peripheral nerve:8.01 spine:7.97 retina:- eye:- artery/aorta:7.19 vein:7.26 lymphnode:7.33 peripheral blood:- spleen:7.29 thymus:7.81 bone marrow:7.90 adipose:7.71 bone:- skin:7.35
CAGE cerebrum:2.25 cerebellum:- brain stem:1.78 corpus callosum/glia:0 pineal gland:3.58 peripheral nerve:- spine:3.84 retina:- eye:- artery/aorta:0 vein:0 lymphnode:0 peripheral blood:- spleen:0 thymus:0 bone marrow:- adipose:0 bone:- skin:-
RNA-seq cerebrum:3.06 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:2.56 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:3.13 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:36.50 placenta:69.20 prostate:45.10 ovary:- testis:69.20 heart:51.10 muscle:- esophagus:- stomach:42.50 intestine:129.60 colon:-     liver/hepato:21.10        lung:68.40    bladder:- kidney:62.40 pituitary:116 thyroid/parathyroid:- adrenal gland:50.80 pancreas:44.50 breast:9.30 salivary:-
GeneChip uterus:7.75 placenta:7.75 prostate:7.64 ovary:7.61 testis:6.98 heart:7.07 muscle:7.37 esophagus:7.42 stomach:7.24 intestine:7.19 colon:6.76 liver/hepato:7.43 lung:7.38 bladder:- kidney:7.59 pituitary:6.63 thyroid/parathyroid:7.27 adrenal gland:7.41 pancreas:7.07 breast:7.46 salivary:7.01
CAGE uterus:3.25 placenta:3.73 prostate:0 ovary:3.10 testis:0 heart:0.54 muscle:0 esophagus:0 stomach:- intestine:0 colon:1.47     liver/hepato:0    lung:0 bladder:0 kidney:3.66 pituitary:3.02 thyroid/parathyroid:0 adrenal gland:- pancreas:0 breast:3.58 salivary:0
RNA-seq uterus:- placenta:- prostate:2.96 ovary:2.90 testis:2.95 heart:2.30 muscle:1.50 esophagus:- stomach:- intestine:- colon:2.87     liver/hepato:2.57        lung:2.86    bladder:- kidney:2.71 pituitary:- thyroid/parathyroid:3.42 adrenal gland:3.05 pancreas:- breast:3.03 salivary:-

Gene Information

IDs

Refseq ID NM_005638
Gene ID 6845
Unigene ID Hs.24167
Probe set ID 202829_s_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000124333
GTEx ID ENSG00000124333

Orthologous Gene

Mouse[2]  NM_011515
Rat[1]  NM_053531

Chromosomal Region

Xq28  [155,110,956  -  155,173,433]
Yq28  [59,213,962  -  59,276,439]

Gene Family (Interpro ID)

IPR010908  Longin
IPR011012  Longin-like

Link to Pubmed  (Pubmed ID)

6495485
8125298
8640232
9614185
10459012
10564831
10655549
10888671
11031247
11076863
11101518
11252894
11278762
11440841
11786915
11840509
12175335
12444103
12477932
12853575
14672948
14993220
15133481
15470500
15489334
15489336
15610015
16195891
16354670
16381901
16430921
16495485
17897319
18029348
18042464
18253931
18362137
18571410
18775314
18819912
19056867
19138172
19451649
19745841
19781582
20144992
20378544
21139048
21609427
21674799
21805468
21890473
21906983
21963094
21987572
22002060
22053931
22188132
22323709
22589474
22951367
23000965
23104059
23217169
23322049
23471971
23741335
24173214
24816145

Gene Ontology  (GO ID)

Biological Process

GO:0000046  autophagic vacuole fusion
GO:0017156  calcium ion-dependent exocytosis
GO:0008333  endosome to lysosome transport
GO:0043308  eosinophil degranulation
GO:0006888  ER to Golgi vesicle-mediated transport
GO:0043001  Golgi to plasma membrane protein transport
GO:0016044  membrane organization
GO:0043312  neutrophil degranulation
GO:0006911  phagocytosis, engulfment
GO:0006892  post-Golgi vesicle-mediated transport
GO:0034197  triglyceride transport
GO:0006906  vesicle fusion
GO:0048280  vesicle fusion with Golgi apparatus
GO:0016192  vesicle-mediated transport

Cellular Component

GO:0045177  apical part of cell
GO:0030054  cell junction
GO:0005737  cytoplasm
GO:0005789  endoplasmic reticulum membrane
GO:0005794  Golgi apparatus
GO:0016021  integral to membrane
GO:0043231  intracellular membrane-bounded organelle
GO:0031902  late endosome membrane
GO:0005765  lysosomal membrane
GO:0043005  neuron projection
GO:0048471  perinuclear region of cytoplasm
GO:0045335  phagocytic vesicle
GO:0030670  phagocytic vesicle membrane
GO:0005886  plasma membrane
GO:0031201  SNARE complex
GO:0045202  synapse
GO:0030658  transport vesicle membrane

Molecular Function

GO:0005515  protein binding
GO:0019905  syntaxin binding