tenascin XB

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Synonym

XB, TENX, TNX, Hexabrachion-like protein, TN-X, tenascin XB, TNXBS, HXBL, Tenascin-X precursor, TNXB, TNXB1, TNXB2, XBS

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:14.20 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:92 spine:112.30 retina:- eye:58.80 artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:56.70 thymus:- bone marrow:59 adipose:161.30 bone:102.40 skin:4.80
GeneChip cerebrum:5.29 cerebellum:5.87 brain stem:5.29 corpus callosum/glia:5.28 pineal gland:- peripheral nerve:7.13 spine:5.37 retina:- eye:- artery/aorta:7.95 vein:8.10 lymphnode:6.03 peripheral blood:- spleen:6.05 thymus:5.03 bone marrow:5.96 adipose:8.33 bone:- skin:7.32
CAGE cerebrum:2.01 cerebellum:- brain stem:2.51 corpus callosum/glia:2.17 pineal gland:2.71 peripheral nerve:- spine:3.21 retina:- eye:- artery/aorta:5.33 vein:5.57 lymphnode:3.76 peripheral blood:- spleen:3.77 thymus:1.85 bone marrow:- adipose:5.67 bone:- skin:-
RNA-seq cerebrum:0 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:36.50 placenta:21.90 prostate:78.90 ovary:186.30 testis:21.60 heart:38.30 muscle:60.30 esophagus:- stomach:21.20 intestine:97.20 colon:84.80     liver/hepato:-        lung:97.80    bladder:- kidney:10.40 pituitary:- thyroid/parathyroid:- adrenal gland:609.40 pancreas:8.90 breast:18.60 salivary:-
GeneChip uterus:7.32 placenta:5.69 prostate:5.72 ovary:7.37 testis:5.59 heart:7.40 muscle:6.31 esophagus:7.44 stomach:7.08 intestine:7.05 colon:6.92 liver/hepato:5.51 lung:7.54 bladder:- kidney:5.40 pituitary:5 thyroid/parathyroid:6.50 adrenal gland:8.02 pancreas:5.85 breast:7.67 salivary:5.45
CAGE uterus:5.34 placenta:3.86 prostate:4.16 ovary:5.55 testis:3.73 heart:5.86 muscle:4.58 esophagus:5.10 stomach:- intestine:4.18 colon:5.10     liver/hepato:2.88    lung:4.99 bladder:5.34 kidney:2.64 pituitary:2.08 thyroid/parathyroid:3.72 adrenal gland:- pancreas:2.60 breast:5.96 salivary:2.99
RNA-seq uterus:- placenta:- prostate:0 ovary:0 testis:0 heart:0 muscle:0 esophagus:- stomach:- intestine:- colon:0     liver/hepato:0        lung:0    bladder:- kidney:0 pituitary:- thyroid/parathyroid:0 adrenal gland:0 pancreas:- breast:0 salivary:-

Gene Information

IDs

Refseq ID NM_019105
Gene ID 7148
Unigene ID Hs.485104
Probe set ID 208609_s_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000168477
GTEx ID ENSG00000168477

Orthologous Gene

Mouse[1]  NM_031176
Rat[1]  NM_031176

Chromosomal Region

HSCHR6_MHC_APD  [32,052,787  -  32,065,237]
HSCHR6_MHC_COX  [31,957,379  -  32,033,845]
HSCHR6_MHC_QBL  [31,966,588  -  32,011,521]
6p21.33  [32,008,931  -  32,083,111]
HSCHR6_MHC_DBB  [31,984,751  -  32,061,164]
HSCHR6_MHC_MANN  [32,072,022  -  32,105,429]
HSCHR6_MHC_SSTO  [32,000,781  -  32,027,628]
HSCHR6_MHC_MCF  [32,085,376  -  32,161,818]

Gene Family (Interpro ID)

IPR000742  EGF-like, type 3
IPR003961  Fibronectin, type III
IPR008957  Fibronectin, type III-like fold

Link to Pubmed  (Pubmed ID)

1373808
2475872
7686164
8530023
8923003
9278449
9288108
10072631
10207042
10343159
10737800
11122379
11642233
12121677
12376099
12477932
12746407
14656967
14729256
15102077
15339882
15342556
15455729
15733269
16278880
16335952
16567571
17033827
17192952
17202312
17263730
17453911
18058064
18091320
18155129
18335242
18391951
18588874
18679583
19116923
19143814
19143821
19198610
19204726
19266077
19738457
19851445
19860791
19913121
20041166
20301456
20587610
20628086
20853426
21317684
21408207
21829377
22588153
22694956
22827484
22991340
23028341
23284009
23620400
23886662

Gene Ontology  (GO ID)

Biological Process

GO:0030036  actin cytoskeleton organization
GO:0007155  cell adhesion
GO:0016337  cell-cell adhesion
GO:0007160  cell-matrix adhesion
GO:0030199  collagen fibril organization
GO:0032963  collagen metabolic process
GO:0048251  elastic fiber assembly
GO:0006631  fatty acid metabolic process
GO:0043206  fibril organization
GO:0043506  regulation of JUN kinase activity
GO:0006641  triglyceride metabolic process

Cellular Component

GO:0031012  extracellular matrix
GO:0005615  extracellular space
GO:0005583  fibrillar collagen
GO:0005622  intracellular
GO:0005578  proteinaceous extracellular matrix

Molecular Function

GO:0005518  collagen binding
GO:0008201  heparin binding
GO:0005178  integrin binding