xeroderma pigmentosum, complementation group C

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Synonym

p125, XPCC, XPC, DNA-repair protein complementing XP-C cells, xeroderma pigmentosum, complementation group C, XP3

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:69.90

cerebellum:75.60

brain stem:-

corpus callosum/glia:29.20

pineal gland:-

peripheral nerve:61.30

spine:112.30

retina:-

eye:141

artery/aorta:89.90

vein:-

lymphnode:80.90

peripheral blood:72.90

spleen:56.70

thymus:90.20

bone marrow:118.10

adipose:121

bone:64

skin:38.40

GeneChip

cerebrum:7.31

cerebellum:7.12

brain stem:7.38

corpus callosum/glia:7.83

pineal gland:-

peripheral nerve:7.60

spine:7.60

retina:-

eye:-

artery/aorta:7.59

vein:7.34

lymphnode:7.83

peripheral blood:-

spleen:7.93

thymus:7.52

bone marrow:7.04

adipose:7.58

bone:-

skin:7.60

CAGE

cerebrum:3.47

cerebellum:-

brain stem:3.87

corpus callosum/glia:3.80

pineal gland:3.54

peripheral nerve:-

spine:3.87

retina:-

eye:-

artery/aorta:3.62

vein:3.87

lymphnode:3.55

peripheral blood:-

spleen:3.73

thymus:3.42

bone marrow:-

adipose:3.56

bone:-

skin:-

RNA-seq

cerebrum:2.76

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:3.46

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:3.25

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:200.50

placenta:69.20

prostate:45.10

ovary:74.50

testis:38.90

heart:25.50

muscle:-

esophagus:-

stomach:21.20

intestine:64.80

colon:25.40

liver/hepato:42.20

lung:102.60

bladder:-

kidney:166.40

pituitary:-

thyroid/parathyroid:-

adrenal gland:-

pancreas:-

breast:37.20

salivary:-

GeneChip

uterus:7.85

placenta:7.47

prostate:7.91

ovary:8.12

testis:7.31

heart:7.31

muscle:6.70

esophagus:7.57

stomach:7.53

intestine:7.23

colon:7.20

liver/hepato:7.87

lung:7.54

bladder:-

kidney:8.06

pituitary:8.05

thyroid/parathyroid:7.91

adrenal gland:7.58

pancreas:6.98

breast:7.81

salivary:7.39

CAGE

uterus:3.90

placenta:3.97

prostate:3.85

ovary:3.80

testis:3.31

heart:3.26

muscle:3.66

esophagus:3.58

stomach:-

intestine:3.89

colon:3.28

liver/hepato:3.40

lung:3.54

bladder:3.70

kidney:3.77

pituitary:4.08

thyroid/parathyroid:3.82

adrenal gland:-

pancreas:3.20

breast:3.27

salivary:3.53

RNA-seq

uterus:-

placenta:-

prostate:4.08

ovary:4.11

testis:3.60

heart:1.69

muscle:3.15

esophagus:-

stomach:-

intestine:-

colon:2.84

liver/hepato:2.39

lung:2.64

bladder:-

kidney:3.14

pituitary:-

thyroid/parathyroid:4.56

adrenal gland:3.63

pancreas:-

breast:3.13

salivary:-

IDs

Refseq ID	NM_004628
Gene ID	7508
Unigene ID	Hs.475538
Probe set ID	209375_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000154767
GTEx ID	ENSG00000154767

Orthologous Gene

Mouse[1]	NM_009531
Rat[1]	NM_001107874

Chromosomal Region

3p25.1 [14,186,647 - 14,220,283]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

IPR004583	DNA repair protein Rad4
IPR018026	DNA repair protein Rad4, subgroup

Gene Ontology (GO ID)

Biological Process

GO:0000075	cell cycle checkpoint
GO:0006281	DNA repair
GO:0031573	intra-S DNA damage checkpoint
GO:0006289	nucleotide-excision repair
GO:0000715	nucleotide-excision repair, DNA damage recognition
GO:0000718	nucleotide-excision repair, DNA damage removal
GO:0042493	response to drug
GO:0010224	response to UV-B

Cellular Component

GO:0005737	cytoplasm
GO:0005654	nucleoplasm
GO:0005634	nucleus

Molecular Function

GO:0000405	bubble DNA binding
GO:0003684	damaged DNA binding
GO:0000404	loop DNA binding
GO:0005515	protein binding
GO:0003697	single-stranded DNA binding

xeroderma pigmentosum, complementation group C

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function