splicing factor 1

Synonym

Transcription factor ZFM1, D11S636, SF1, Mammalian branch point-binding protein mBBP, Zinc finger protein 162, Splicing factor 1, ZNF162, zinc finger protein 162, Zinc finger gene in MEN1 locus, splicing factor 1, ZFM1

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:130.40

cerebellum:188.90

brain stem:-

corpus callosum/glia:175

pineal gland:-

peripheral nerve:61.30

spine:224.60

retina:-

eye:129.30

artery/aorta:119.90

vein:66.60

lymphnode:364

peripheral blood:182.20

spleen:208

thymus:141.70

bone marrow:78.70

adipose:-

bone:89.60

skin:96

GeneChip

cerebrum:8.10

cerebellum:9.03

brain stem:7.88

corpus callosum/glia:8.67

pineal gland:-

peripheral nerve:8.61

spine:8.42

retina:-

eye:-

artery/aorta:8.67

vein:8.44

lymphnode:9.12

peripheral blood:-

spleen:9.07

thymus:8.91

bone marrow:8.54

adipose:8.63

bone:-

skin:8.23

CAGE

cerebrum:4.99

cerebellum:-

brain stem:5.05

corpus callosum/glia:5.41

pineal gland:5.14

peripheral nerve:-

spine:4.98

retina:-

eye:-

artery/aorta:5.23

vein:5.49

lymphnode:5.30

peripheral blood:-

spleen:5.17

thymus:5.58

bone marrow:-

adipose:5.24

bone:-

skin:-

RNA-seq

cerebrum:1.17

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:1.85

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:2.36

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:173.20

placenta:138.40

prostate:157.70

ovary:74.50

testis:134.10

heart:38.30

muscle:40.20

esophagus:-

stomach:127.50

intestine:32.40

colon:110.20

liver/hepato:84.40

lung:146.60

bladder:125.60

kidney:124.80

pituitary:232

thyroid/parathyroid:-

adrenal gland:253.90

pancreas:71.10

breast:167.30

salivary:-

GeneChip

uterus:8.64

placenta:8.17

prostate:8.58

ovary:8.71

testis:9.02

heart:8.01

muscle:8.23

esophagus:8.51

stomach:8.44

intestine:7.98

colon:8.27

liver/hepato:8.01

lung:8.69

bladder:-

kidney:8.33

pituitary:8.86

thyroid/parathyroid:8.93

adrenal gland:8.44

pancreas:7.49

breast:9.09

salivary:8.47

CAGE

uterus:5.28

placenta:4.91

prostate:5.27

ovary:5.44

testis:5.62

heart:5.09

muscle:5.26

esophagus:4.88

stomach:-

intestine:4.97

colon:5.12

liver/hepato:4.94

lung:5.19

bladder:5.17

kidney:4.82

pituitary:4.99

thyroid/parathyroid:5.03

adrenal gland:-

pancreas:4.86

breast:5.15

salivary:4.80

RNA-seq

uterus:-

placenta:-

prostate:2.39

ovary:2.45

testis:2.59

heart:0.96

muscle:1.85

esophagus:-

stomach:-

intestine:-

colon:1.89

liver/hepato:1.57

lung:2.31

bladder:-

kidney:0.96

pituitary:-

thyroid/parathyroid:1.62

adrenal gland:1.75

pancreas:-

breast:1.80

salivary:-

IDs

Refseq ID	NM_201997
Gene ID	7536
Unigene ID	Hs.502829
Probe set ID	208313_s_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000168066
GTEx ID	ENSG00000168066

Orthologous Gene

Mouse[5]	NM_001110791, NM_011750
Rat[4]	NM_001110793, NM_058210

Chromosomal Region

11q13.1 [64,532,078 - 64,546,316]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

IPR004087	K Homology
IPR004088	K Homology, type 1
IPR001878	Zinc finger, CCHC-type

GO:0022402	cell cycle process
GO:0033327	Leydig cell differentiation
GO:0030238	male sex determination
GO:0000389	nuclear mRNA 3'-splice site recognition
GO:0000398	nuclear mRNA splicing, via spliceosome
GO:0050810	regulation of steroid biosynthetic process
GO:0006355	regulation of transcription, DNA-dependent
GO:0000245	spliceosome assembly
GO:0006351	transcription, DNA-dependent

GO:0005730	nucleolus
GO:0005634	nucleus
GO:0005840	ribosome
GO:0005681	spliceosomal complex

GO:0003676	nucleic acid binding
GO:0003723	RNA binding
GO:0003714	transcription corepressor activity
GO:0008270	zinc ion binding

splicing factor 1

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function