HLA-B associated transcript 1

Synonym

UAP56, Spliceosome RNA helicase BAT1, HLA-B associated transcript 1, 56 kDa U2AF65-associated protein, ATP-dependent RNA helicase p47, HLA-B-associated transcript-1, DDX39B, DEAD box protein UAP56, D6S81E

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:215.70

cerebellum:314.80

brain stem:-

corpus callosum/glia:116.60

pineal gland:445

peripheral nerve:92

spine:112.30

retina:118.60

eye:223.30

artery/aorta:30

vein:-

lymphnode:404.40

peripheral blood:127.50

spleen:113.40

thymus:837.40

bone marrow:196.80

adipose:363

bone:127.90

skin:148.80

GeneChip

cerebrum:9.01

cerebellum:10.04

brain stem:9.02

corpus callosum/glia:9.38

pineal gland:-

peripheral nerve:9.59

spine:9.21

retina:-

eye:-

artery/aorta:9.96

vein:9.37

lymphnode:10.39

peripheral blood:-

spleen:10.42

thymus:10.48

bone marrow:9.83

adipose:9.96

bone:-

skin:9.93

CAGE

cerebrum:4.87

cerebellum:-

brain stem:4.86

corpus callosum/glia:5.32

pineal gland:5.72

peripheral nerve:-

spine:5.49

retina:-

eye:-

artery/aorta:4.95

vein:5.19

lymphnode:5.20

peripheral blood:-

spleen:5.02

thymus:5.48

bone marrow:-

adipose:5.18

bone:-

skin:-

RNA-seq

cerebrum:0

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:0

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:0

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:492.10

placenta:207.70

prostate:202.80

ovary:335.40

testis:138.40

heart:242.70

muscle:120.50

esophagus:342.80

stomach:254.90

intestine:259.20

colon:203.50

liver/hepato:84.40

lung:317.70

bladder:-

kidney:72.80

pituitary:695.90

thyroid/parathyroid:-

adrenal gland:101.60

pancreas:88.90

breast:250.90

salivary:328.40

GeneChip

uterus:10.24

placenta:9.46

prostate:9.97

ovary:10.27

testis:9.69

heart:9.37

muscle:9.05

esophagus:9.69

stomach:9.87

intestine:9.49

colon:9.59

liver/hepato:9.63

lung:9.97

bladder:-

kidney:9.42

pituitary:10.32

thyroid/parathyroid:10.19

adrenal gland:10.20

pancreas:9.21

breast:10.39

salivary:9.32

CAGE

uterus:5.70

placenta:5.03

prostate:5.16

ovary:5.46

testis:5.12

heart:4.90

muscle:5.21

esophagus:5.19

stomach:-

intestine:4.97

colon:5.07

liver/hepato:5.01

lung:4.97

bladder:5.35

kidney:5.03

pituitary:5.54

thyroid/parathyroid:5.20

adrenal gland:-

pancreas:5.19

breast:4.93

salivary:5.27

RNA-seq

uterus:-

placenta:-

prostate:0

ovary:0

testis:0

heart:0

muscle:0

esophagus:-

stomach:-

intestine:-

colon:0

liver/hepato:0

lung:0

bladder:-

kidney:0

pituitary:-

thyroid/parathyroid:0

adrenal gland:0

pancreas:-

breast:0

salivary:-

IDs

Refseq ID	NM_080598
Gene ID	7919
Unigene ID	Hs.254042
Probe set ID	200041_s_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000198563 ENSG00000235439
GTEx ID	ENSG00000198563 ENSG00000235439

Orthologous Gene

Mouse[2]	NM_019693
Rat [0]

Chromosomal Region

HSCHR6_MHC_APD [31,509,287 - 31,518,252]

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6p21.33 [31,497,996 - 31,510,225]

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HSCHR6_MHC_QBL [31,488,280 - 31,504,633]

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HSCHR6_MHC_MANN [31,537,515 - 31,553,854]

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HSCHR6_MHC_SSTO [31,487,943 - 31,500,172]

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HSCHR6_MHC_MCF [31,574,350 - 31,590,705]

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HSCHR6_MHC_DBB [31,480,180 - 31,496,536]

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HSCHR6_MHC_COX [31,485,454 - 31,501,810]

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Gene Family (Interpro ID)

IPR014001	DEAD-like helicase, N-terminal
IPR014021	Helicase, superfamily 1/2, ATP-binding domain

GO:0046784	intronless viral mRNA export from host nucleus
GO:0006406	mRNA export from nucleus
GO:0000398	nuclear mRNA splicing, via spliceosome
GO:0010501	RNA secondary structure unwinding
GO:0008380	RNA splicing
GO:0000245	spliceosome assembly

GO:0005737	cytoplasm
GO:0016607	nuclear speck
GO:0005634	nucleus
GO:0005681	spliceosomal complex
GO:0000346	transcription export complex
GO:0005687	U4 snRNP
GO:0005688	U6 snRNP

GO:0005524	ATP binding
GO:0043008	ATP-dependent protein binding
GO:0004004	ATP-dependent RNA helicase activity
GO:0005515	protein binding
GO:0008186	RNA-dependent ATPase activity
GO:0030621	U4 snRNA binding
GO:0017070	U6 snRNA binding

HLA-B associated transcript 1

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function