RD RNA binding protein

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Synonym

RDBP, NELF-E, RD protein, D6S45, Negative elongation factor E, RD RNA-binding protein, NELFE, RD RNA binding protein

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:26.10 cerebellum:12.60 brain stem:- corpus callosum/glia:87.50 pineal gland:- peripheral nerve:61.30 spine:- retina:- eye:52.90 artery/aorta:- vein:133.30 lymphnode:80.90 peripheral blood:91.10 spleen:18.90 thymus:12.90 bone marrow:59 adipose:40.30 bone:12.80 skin:19.20
GeneChip cerebrum:7.23 cerebellum:6.60 brain stem:7.46 corpus callosum/glia:7.52 pineal gland:- peripheral nerve:7.36 spine:7.33 retina:- eye:- artery/aorta:7.68 vein:7.44 lymphnode:7.29 peripheral blood:- spleen:7.11 thymus:7.72 bone marrow:7.12 adipose:7.47 bone:- skin:7.66
CAGE cerebrum:3.73 cerebellum:- brain stem:3.59 corpus callosum/glia:3.81 pineal gland:3.28 peripheral nerve:- spine:3.99 retina:- eye:- artery/aorta:4.04 vein:3.91 lymphnode:3.73 peripheral blood:- spleen:3.63 thymus:4.00 bone marrow:- adipose:3.80 bone:- skin:-
RNA-seq cerebrum:0 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:45.60 placenta:65.60 prostate:22.50 ovary:74.50 testis:38.90 heart:25.50 muscle:60.30 esophagus:- stomach:- intestine:32.40 colon:67.80     liver/hepato:21.10        lung:19.60    bladder:- kidney:52 pituitary:- thyroid/parathyroid:163.70 adrenal gland:101.60 pancreas:44.50 breast:83.60 salivary:-
GeneChip uterus:7.56 placenta:7.63 prostate:7.60 ovary:7.92 testis:9.55 heart:7.17 muscle:7.27 esophagus:7.62 stomach:7.14 intestine:7.31 colon:7.33 liver/hepato:6.77 lung:7.40 bladder:- kidney:7.32 pituitary:7.61 thyroid/parathyroid:7.58 adrenal gland:7.55 pancreas:7.43 breast:7.67 salivary:7.44
CAGE uterus:3.70 placenta:3.93 prostate:3.60 ovary:3.76 testis:4.61 heart:4.01 muscle:4.27 esophagus:3.84 stomach:- intestine:3.64 colon:3.80     liver/hepato:3.18    lung:3.80 bladder:3.56 kidney:3.78 pituitary:3.63 thyroid/parathyroid:3.84 adrenal gland:- pancreas:4.47 breast:4.00 salivary:4.19
RNA-seq uterus:- placenta:- prostate:0 ovary:0 testis:0 heart:0 muscle:0 esophagus:- stomach:- intestine:- colon:0     liver/hepato:0        lung:0    bladder:- kidney:0 pituitary:- thyroid/parathyroid:0 adrenal gland:0 pancreas:- breast:0 salivary:-

Gene Information

IDs

Refseq ID NM_002904
Gene ID 7936
Unigene ID Hs.423935
Probe set ID 209219_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000204356
ENSG00000206268
ENSG00000206357
ENSG00000229363
ENSG00000231044
ENSG00000233801
GTEx ID ENSG00000204356
ENSG00000206268
ENSG00000206357
ENSG00000229363
ENSG00000231044
ENSG00000233801

Orthologous Gene

Mouse[3]  NM_001045863, NM_001045864, NM_138580
Rat[2]  NM_001165901, NM_212548, NM_138580

Chromosomal Region

HSCHR6_MHC_QBL  [31,910,261  -  31,917,261]
HSCHR6_MHC_DBB  [31,902,055  -  31,909,055]
HSCHR6_MHC_COX  [31,907,416  -  31,914,421]
HSCHR6_MHC_SSTO  [31,911,716  -  31,918,721]
HSCHR6_MHC_MCF  [31,996,311  -  32,003,316]
6p21.33  [31,919,864  -  31,926,887]

Gene Family (Interpro ID)

IPR000504  RNA recognition motif, RNP-1

Link to Pubmed  (Pubmed ID)

2119325
2612324
3353717
8373374
9264031
9776767
9799600
10072631
10199401
11112772
11940650
12477932
12612062
12676794
14574404
14656967
14667819
15302935
15342491
15489334
15561718
16169070
16838299
16880520
16898873
16964243
17081983
17353931
17442680
17499042
17643375
18029348
18303858
18562274
19115949
19143814
19245807
19556007
19615732
19851445
20097260
20305087
20471948
21139048
21890473
22412018
22614758
22740393
23577725
23602568
24453987
24636995
24816145

Gene Ontology  (GO ID)

Biological Process

GO:0008150  biological_process
GO:0010467  gene expression
GO:0034244  negative regulation of RNA elongation from RNA polymerase II promoter
GO:0050434  positive regulation of viral transcription
GO:0006368  RNA elongation from RNA polymerase II promoter
GO:0006366  transcription from RNA polymerase II promoter
GO:0016032  viral reproduction

Cellular Component

GO:0005739  mitochondrion
GO:0032021  NELF complex
GO:0005730  nucleolus
GO:0005654  nucleoplasm
GO:0005634  nucleus

Molecular Function

GO:0000166  nucleotide binding
GO:0005515  protein binding
GO:0003723  RNA binding