lin-28 homolog (C. elegans)

Synonym

FLJ12457, LIN28, lin-28 homolog (C. elegans), LIN-28, CSDD1, Zinc finger CCHC domain-containing protein 1, LIN28A, Lin-28 homolog A, ZCCHC1

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:22.50

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:118.60

eye:-

artery/aorta:-

vein:-

lymphnode:-

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:-

bone:-

skin:-

GeneChip

cerebrum:3.63

cerebellum:3.86

brain stem:3.65

corpus callosum/glia:3.64

pineal gland:-

peripheral nerve:3.61

spine:3.59

retina:-

eye:-

artery/aorta:3.59

vein:3.73

lymphnode:3.44

peripheral blood:-

spleen:3.50

thymus:3.34

bone marrow:3.53

adipose:3.49

bone:-

skin:3.45

CAGE

cerebrum:0

cerebellum:-

brain stem:0

corpus callosum/glia:0

pineal gland:0

peripheral nerve:-

spine:0

retina:-

eye:-

artery/aorta:0

vein:0

lymphnode:0

peripheral blood:-

spleen:0

thymus:0

bone marrow:-

adipose:0

bone:-

skin:-

RNA-seq

cerebrum:0.03

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:0

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:0.01

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:-

placenta:-

prostate:-

ovary:-

testis:4.30

heart:-

muscle:-

esophagus:-

stomach:-

intestine:-

colon:-

liver/hepato:-

lung:-

bladder:-

kidney:-

pituitary:-

thyroid/parathyroid:-

adrenal gland:-

pancreas:-

breast:-

salivary:-

GeneChip

uterus:3.46

placenta:3.80

prostate:3.40

ovary:3.50

testis:4.18

heart:3.64

muscle:3.80

esophagus:3.37

stomach:3.49

intestine:3.63

colon:3.59

liver/hepato:3.49

lung:3.59

bladder:-

kidney:3.50

pituitary:3.67

thyroid/parathyroid:3.41

adrenal gland:3.52

pancreas:3.49

breast:3.55

salivary:3.52

CAGE

uterus:0

placenta:0

prostate:0

ovary:0

testis:0.55

heart:0

muscle:0

esophagus:0

stomach:-

intestine:0

colon:0

liver/hepato:0

lung:0

bladder:0

kidney:0

pituitary:0

thyroid/parathyroid:0

adrenal gland:-

pancreas:0

breast:0

salivary:0

RNA-seq

uterus:-

placenta:-

prostate:0.01

ovary:0.02

testis:0.46

heart:0.00

muscle:0.00

esophagus:-

stomach:-

intestine:-

colon:0.00

liver/hepato:0

lung:0.00

bladder:-

kidney:0.00

pituitary:-

thyroid/parathyroid:0.00

adrenal gland:0.06

pancreas:-

breast:0.02

salivary:-

IDs

Refseq ID	NM_024674
Gene ID	79727
Unigene ID	Hs.86154
Probe set ID	219823_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000131914
GTEx ID	ENSG00000131914

Orthologous Gene

Mouse[1]	NM_145833
Rat[1]	NM_001109269

Chromosomal Region

1p36.11 [26,737,269 - 26,756,213]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

IPR011129	Cold shock protein
IPR002059	Cold-shock protein, DNA-binding
IPR001878	Zinc finger, CCHC-type

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

GO:0007281	germ cell development
GO:0010587	miRNA catabolic process
GO:0045686	negative regulation of glial cell differentiation
GO:0045666	positive regulation of neuron differentiation
GO:0045727	positive regulation of translation
GO:0031054	pre-microRNA processing
GO:0060964	regulation of gene silencing by miRNA
GO:0006355	regulation of transcription, DNA-dependent
GO:0031123	RNA 3'-end processing
GO:0019827	stem cell maintenance

Cellular Component

GO:0005737	cytoplasm
GO:0000932	cytoplasmic mRNA processing body
GO:0005730	nucleolus
GO:0005634	nucleus
GO:0010494	stress granule

Molecular Function

GO:0003677	DNA binding
GO:0035198	miRNA binding
GO:0003729	mRNA binding
GO:0005515	protein binding
GO:0003723	RNA binding
GO:0031369	translation initiation factor binding
GO:0008270	zinc ion binding

lin-28 homolog (C. elegans)

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function