centrosomal protein 290kDa

Synonym

centrosomal protein 290kDa, rd16, Tumor antigen se2-2, NPHP6, FLJ21979, FLJ13615, Centrosomal protein Cep290, KIAA0373, JBTS5, 3H11Ag, CEP290, SLSN6, JBTS6, Nephrocystin-6

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:17.80

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:61.30

spine:-

retina:-

eye:47

artery/aorta:-

vein:-

lymphnode:50.60

peripheral blood:18.20

spleen:-

thymus:25.80

bone marrow:-

adipose:-

bone:25.60

skin:14.40

GeneChip

cerebrum:4.87

cerebellum:4.36

brain stem:4.92

corpus callosum/glia:5.06

pineal gland:-

peripheral nerve:4.98

spine:4.79

retina:-

eye:-

artery/aorta:4.62

vein:4.58

lymphnode:4.78

peripheral blood:-

spleen:4.81

thymus:5.13

bone marrow:4.18

adipose:4.41

bone:-

skin:4.53

CAGE

cerebrum:2.71

cerebellum:-

brain stem:2.88

corpus callosum/glia:2.11

pineal gland:3.36

peripheral nerve:-

spine:3.18

retina:-

eye:-

artery/aorta:2.00

vein:2.20

lymphnode:1.61

peripheral blood:-

spleen:2.30

thymus:2.38

bone marrow:-

adipose:2.12

bone:-

skin:-

RNA-seq

cerebrum:1.55

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:0.68

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:0.90

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:27.30

placenta:14.60

prostate:-

ovary:111.80

testis:56.20

heart:12.80

muscle:-

esophagus:-

stomach:42.50

intestine:-

colon:50.90

liver/hepato:21.10

lung:24.40

bladder:-

kidney:20.80

pituitary:116

thyroid/parathyroid:-

adrenal gland:-

pancreas:26.70

breast:-

salivary:-

GeneChip

uterus:5.27

placenta:4.37

prostate:5.23

ovary:5.33

testis:5.42

heart:4.54

muscle:4.10

esophagus:4.17

stomach:4.54

intestine:4.38

colon:4.08

liver/hepato:4.29

lung:4.72

bladder:-

kidney:4.51

pituitary:5.01

thyroid/parathyroid:4.91

adrenal gland:4.74

pancreas:3.76

breast:4.56

salivary:4.16

CAGE

uterus:2.77

placenta:1.90

prostate:2.64

ovary:2.49

testis:2.56

heart:2.20

muscle:1.47

esophagus:2.03

stomach:-

intestine:2.04

colon:2.41

liver/hepato:1.16

lung:2.45

bladder:2.49

kidney:2.35

pituitary:3.17

thyroid/parathyroid:1.94

adrenal gland:-

pancreas:0.94

breast:2.27

salivary:1.58

RNA-seq

uterus:-

placenta:-

prostate:1.57

ovary:2.41

testis:2.16

heart:1.24

muscle:0.27

esophagus:-

stomach:-

intestine:-

colon:1.03

liver/hepato:0.41

lung:0.83

bladder:-

kidney:1.47

pituitary:-

thyroid/parathyroid:1.62

adrenal gland:1.30

pancreas:-

breast:1.05

salivary:-

IDs

Refseq ID	NM_025114
Gene ID	80184
Unigene ID	Hs.150444
Probe set ID	205250_s_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000198707
GTEx ID	ENSG00000198707

Orthologous Gene

Mouse[1]	NM_146009
Rat[1]	NM_001135755

Chromosomal Region

12q21.32 [88,442,794 - 88,535,993]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

GO:0042384	cilium assembly
GO:0060271	cilium morphogenesis
GO:0007163	establishment or maintenance of cell polarity
GO:0042462	eye photoreceptor cell development
GO:0000086	G2/M transition of mitotic cell cycle
GO:0030902	hindbrain development
GO:0000278	mitotic cell cycle
GO:0030916	otic vesicle formation
GO:0045893	positive regulation of transcription, DNA-dependent
GO:0048793	pronephros development
GO:0015031	protein transport
GO:0030814	regulation of cAMP metabolic process
GO:0060041	retina development in camera-type eye

Cellular Component

GO:0009986	cell surface
GO:0005813	centrosome
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0000930	gamma-tubulin complex
GO:0005932	microtubule basal body
GO:0005634	nucleus
GO:0032391	photoreceptor connecting cilium

Molecular Function

GO:0051011	microtubule minus-end binding
GO:0005515	protein binding

centrosomal protein 290kDa

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function