AT rich interactive domain 1A (SWI-like)

Synonym

BAF250, BRG1-associated factor 250, ARID domain-containing protein 1A, SWI-like protein, B120, actin dependent regulator of chromatin, P270, SMARCF1, subfamily f, hELD, AT-rich interactive domain-containing protein 1A, BAF250A, C10rf4, C1orf4, matrix associated, AT rich interactive domain 1A (SWI- like), ARID1A, hOSA1, BRG1-associated factor 250a, OSA1, Osa homolog 1, BAF250a, SWI-SNF complex protein p270, BM029

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:64

cerebellum:50.40

brain stem:-

corpus callosum/glia:29.20

pineal gland:148.30

peripheral nerve:153.40

spine:-

retina:118.60

eye:64.60

artery/aorta:60

vein:466.50

lymphnode:101.10

peripheral blood:18.20

spleen:226.90

thymus:154.60

bone marrow:413.30

adipose:40.30

bone:12.80

skin:129.60

GeneChip

cerebrum:7.81

cerebellum:7.64

brain stem:7.69

corpus callosum/glia:8.25

pineal gland:-

peripheral nerve:8.08

spine:8.12

retina:-

eye:-

artery/aorta:8.05

vein:7.53

lymphnode:8.52

peripheral blood:-

spleen:8.85

thymus:9.05

bone marrow:8.34

adipose:8

bone:-

skin:7.95

CAGE

cerebrum:3.40

cerebellum:-

brain stem:3.28

corpus callosum/glia:3.67

pineal gland:3.78

peripheral nerve:-

spine:3.39

retina:-

eye:-

artery/aorta:3.64

vein:3.75

lymphnode:3.97

peripheral blood:-

spleen:3.66

thymus:4.42

bone marrow:-

adipose:3.52

bone:-

skin:-

RNA-seq

cerebrum:0.94

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:2.06

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:0.63

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:145.80

placenta:112.90

prostate:101.40

ovary:111.80

testis:56.20

heart:89.40

muscle:40.20

esophagus:-

stomach:169.90

intestine:32.40

colon:178.10

liver/hepato:52.80

lung:88

bladder:-

kidney:-

pituitary:-

thyroid/parathyroid:163.70

adrenal gland:50.80

pancreas:-

breast:390.30

salivary:-

GeneChip

uterus:8.20

placenta:7.77

prostate:8.30

ovary:8.24

testis:8.10

heart:7.61

muscle:7

esophagus:8.29

stomach:8.26

intestine:7.55

colon:8.06

liver/hepato:8.15

lung:7.91

bladder:-

kidney:8.13

pituitary:8.05

thyroid/parathyroid:8.51

adrenal gland:8.08

pancreas:7.17

breast:8.38

salivary:7.93

CAGE

uterus:3.65

placenta:3.46

prostate:3.37

ovary:3.50

testis:3.39

heart:3.38

muscle:3.56

esophagus:3.52

stomach:-

intestine:3.45

colon:3.70

liver/hepato:2.90

lung:3.62

bladder:3.40

kidney:3.02

pituitary:3.14

thyroid/parathyroid:3.30

adrenal gland:-

pancreas:3.47

breast:3.95

salivary:3.63

RNA-seq

uterus:-

placenta:-

prostate:2.40

ovary:0.95

testis:0.62

heart:1.12

muscle:0.31

esophagus:-

stomach:-

intestine:-

colon:1.79

liver/hepato:1.68

lung:2.16

bladder:-

kidney:2.49

pituitary:-

thyroid/parathyroid:0.69

adrenal gland:2.25

pancreas:-

breast:1.30

salivary:-

IDs

Refseq ID	NM_139135
Gene ID	8289
Unigene ID	Hs.468972
Probe set ID	212152_x_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000117713
GTEx ID	ENSG00000117713

Orthologous Gene

Mouse[2]	NM_001080819
Rat [0]

Chromosomal Region

1p36.11 [27,022,524 - 27,108,595]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

Gene Ontology (GO ID)

Biological Process

GO:0030521	androgen receptor signaling pathway
GO:0006338	chromatin remodeling
GO:0048096	chromatin-mediated maintenance of transcription
GO:0030520	estrogen receptor signaling pathway
GO:0042921	glucocorticoid receptor signaling pathway
GO:0007399	nervous system development
GO:0006337	nucleosome disassembly
GO:0042766	nucleosome mobilization
GO:0045893	positive regulation of transcription, DNA-dependent
GO:0006357	regulation of transcription from RNA polymerase II promoter
GO:0006351	transcription, DNA-dependent

Cellular Component

GO:0000790	nuclear chromatin
GO:0005730	nucleolus
GO:0005634	nucleus
GO:0016514	SWI/SNF complex

Molecular Function

GO:0003677	DNA binding
GO:0016922	ligand-dependent nuclear receptor binding
GO:0005515	protein binding
GO:0003713	transcription coactivator activity

AT rich interactive domain 1A (SWI-like)

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function