splicing factor 3b, subunit 5, 10kDa

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Synonym

SF3b5, MGC3133, SF3b10, splicing factor 3b, subunit 5, 10kDa, SF3B10, Splicing factor 3B subunit 5, SF3B5, Pre-mRNA-splicing factor SF3b 10 kDa subunit

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:36.70 cerebellum:25.20 brain stem:- corpus callosum/glia:- pineal gland:890.10 peripheral nerve:30.70 spine:- retina:118.60 eye:164.60 artery/aorta:89.90 vein:- lymphnode:60.70 peripheral blood:145.70 spleen:37.80 thymus:- bone marrow:157.40 adipose:121 bone:64 skin:139.20
GeneChip cerebrum:7.79 cerebellum:7.15 brain stem:8.01 corpus callosum/glia:7.69 pineal gland:- peripheral nerve:8.24 spine:7.89 retina:- eye:- artery/aorta:8.31 vein:8.21 lymphnode:8.50 peripheral blood:- spleen:8.27 thymus:8.79 bone marrow:8.47 adipose:8.38 bone:- skin:8.84
CAGE cerebrum:4.02 cerebellum:- brain stem:3.95 corpus callosum/glia:3.86 pineal gland:4.07 peripheral nerve:- spine:3.93 retina:- eye:- artery/aorta:4.31 vein:4.40 lymphnode:4.54 peripheral blood:- spleen:4.20 thymus:4.51 bone marrow:- adipose:3.96 bone:- skin:-
RNA-seq cerebrum:4.51 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:5.49 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:5.59 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:82 placenta:65.60 prostate:78.90 ovary:37.30 testis:121.10 heart:229.90 muscle:140.60 esophagus:- stomach:- intestine:64.80 colon:33.90     liver/hepato:105.60        lung:132    bladder:- kidney:104 pituitary:- thyroid/parathyroid:- adrenal gland:152.40 pancreas:168.90 breast:46.50 salivary:-
GeneChip uterus:8.44 placenta:7.68 prostate:8.64 ovary:8.79 testis:8.81 heart:8.25 muscle:8.12 esophagus:8.89 stomach:8.35 intestine:8.66 colon:8.81 liver/hepato:8.36 lung:8.34 bladder:- kidney:8.95 pituitary:8.67 thyroid/parathyroid:8.56 adrenal gland:8.66 pancreas:8.67 breast:8.75 salivary:8.52
CAGE uterus:4.06 placenta:3.99 prostate:4.08 ovary:4.10 testis:4.53 heart:4.43 muscle:4.36 esophagus:4.51 stomach:- intestine:4.29 colon:4.64     liver/hepato:4.89    lung:4.28 bladder:4.05 kidney:4.60 pituitary:4.36 thyroid/parathyroid:4.44 adrenal gland:- pancreas:5.10 breast:4.39 salivary:4.35
RNA-seq uterus:- placenta:- prostate:5.82 ovary:5.51 testis:5.62 heart:4.66 muscle:5.62 esophagus:- stomach:- intestine:- colon:5.33     liver/hepato:5.51        lung:5.69    bladder:- kidney:5.78 pituitary:- thyroid/parathyroid:5.70 adrenal gland:5.74 pancreas:- breast:5.41 salivary:-

Gene Information

IDs

Refseq ID NM_031287
Gene ID 83443
Unigene ID Hs.110695
Probe set ID 221263_s_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000169976
GTEx ID ENSG00000169976

Orthologous Gene

Mouse[2]  NM_175102
Rat[1]  NM_001126092

Chromosomal Region

6q24.2  [144,416,018  -  144,416,754]

Gene Family (Interpro ID)

IPR009846  Splicing factor 3B subunit 5/RDS3 complex subunit 10
IPR017089  Splicing factor 3B, subunit 5

Link to Pubmed  (Pubmed ID)

11076863
11256614
12226669
12234937
12477932
14574404
15146077
15489334
15489336
16159877
16341674
16381901
17332742
20360068
21139048
21890473
21963094
22053931
22505724
22939629
23602568

Gene Ontology  (GO ID)

Biological Process

GO:0010467  gene expression
GO:0000398  nuclear mRNA splicing, via spliceosome
GO:0008380  RNA splicing

Cellular Component

GO:0005654  nucleoplasm
GO:0005634  nucleus
GO:0005689  U12-type spliceosomal complex