ankyrin repeat domain 27 (VPS9 domain)

 jump to detail

Synonym

ankyrin repeat domain 27 (VPS9 domain), VARP, ANKRD27, FLJ00040, DKFZp434L0718, DKFZP434L0718

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST nodata
GeneChip cerebrum:6.47 cerebellum:6.17 brain stem:6.52 corpus callosum/glia:6.46 pineal gland:- peripheral nerve:6.92 spine:6.79 retina:- eye:- artery/aorta:6.76 vein:6.37 lymphnode:6.81 peripheral blood:- spleen:6.80 thymus:7.68 bone marrow:6.84 adipose:6.58 bone:- skin:6.62
CAGE cerebrum:2.88 cerebellum:- brain stem:2.88 corpus callosum/glia:2.90 pineal gland:2.75 peripheral nerve:- spine:2.86 retina:- eye:- artery/aorta:2.78 vein:2.89 lymphnode:2.71 peripheral blood:- spleen:2.54 thymus:3.17 bone marrow:- adipose:2.82 bone:- skin:-
RNA-seq cerebrum:2.12 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:3.06 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:2.58 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST nodata
GeneChip uterus:6.93 placenta:7.04 prostate:7.33 ovary:6.66 testis:7.54 heart:6.17 muscle:6.12 esophagus:6.69 stomach:6.65 intestine:6.21 colon:6.67 liver/hepato:5.48 lung:7.04 bladder:- kidney:6.59 pituitary:6.30 thyroid/parathyroid:7.28 adrenal gland:6.44 pancreas:4.94 breast:6.85 salivary:6.27
CAGE uterus:2.92 placenta:3.03 prostate:2.78 ovary:2.75 testis:3.05 heart:2.55 muscle:2.44 esophagus:2.79 stomach:- intestine:2.57 colon:3.05     liver/hepato:1.97    lung:2.71 bladder:2.84 kidney:2.49 pituitary:2.54 thyroid/parathyroid:3.03 adrenal gland:- pancreas:1.87 breast:2.83 salivary:2.69
RNA-seq uterus:- placenta:- prostate:3.98 ovary:3.43 testis:4.00 heart:2.10 muscle:3.69 esophagus:- stomach:- intestine:- colon:3.58     liver/hepato:1.36        lung:2.45    bladder:- kidney:2.98 pituitary:- thyroid/parathyroid:2.95 adrenal gland:2.64 pancreas:- breast:2.85 salivary:-

Gene Information

IDs

Refseq ID NM_032139
Gene ID 84079
Unigene ID -
Probe set ID 221522_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000105186
GTEx ID ENSG00000105186

Orthologous Gene

Mouse[2]  NM_145633, NM_178263
Rat[2]  NM_145633, NM_178263

Chromosomal Region

19q13.11  [33,087,907  -  33,166,102]

Gene Family (Interpro ID)

IPR003123  Vacuolar sorting protein 9
IPR013995  Vacuolar sorting protein 9, subgroup

Link to Pubmed  (Pubmed ID)

11076863
11230166
11256614
12477932
14702039
15231748
15489334
15489336
15498874
16381901
16525121
18477474
19745841
19913121
19946888
20628086
21139048
21906983
23104059
23377640
24816145

Gene Ontology  (GO ID)

Biological Process

GO:0045022  early endosome to late endosome transport

Cellular Component

GO:0005769  early endosome
GO:0005764  lysosome

Molecular Function

GO:0005096  GTPase activator activity
GO:0005085  guanyl-nucleotide exchange factor activity
GO:0005515  protein binding