collagen, type XXIII, alpha 1

 jump to detail

Synonym

collagen, type XXIII, alpha 1, Collagen alpha-1(XXIII) chain, DKFZp434K0621, COL23A1

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST nodata
GeneChip nodata
CAGE cerebrum:0.80 cerebellum:- brain stem:0.37 corpus callosum/glia:0.24 pineal gland:0.74 peripheral nerve:- spine:0.89 retina:- eye:- artery/aorta:1.03 vein:1.29 lymphnode:0.79 peripheral blood:- spleen:0.84 thymus:0.23 bone marrow:- adipose:0.14 bone:- skin:-
RNA-seq cerebrum:0.54 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0.53 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0.14 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST nodata
GeneChip nodata
CAGE uterus:0.88 placenta:0.16 prostate:1.38 ovary:0.20 testis:1.51 heart:1.91 muscle:0.55 esophagus:0.46 stomach:- intestine:1.56 colon:0.60     liver/hepato:0.78    lung:0.93 bladder:0.69 kidney:1.03 pituitary:0.40 thyroid/parathyroid:3.71 adrenal gland:- pancreas:0.94 breast:0.90 salivary:0.62
RNA-seq uterus:- placenta:- prostate:0.64 ovary:0.12 testis:0.59 heart:1.96 muscle:0.09 esophagus:- stomach:- intestine:- colon:0.52     liver/hepato:0.12        lung:1.21    bladder:- kidney:0.97 pituitary:- thyroid/parathyroid:3.97 adrenal gland:0.83 pancreas:- breast:0.15 salivary:-

Gene Information

IDs

Refseq ID NM_173465
Gene ID 91522
Unigene ID -
Probe set ID -
Ensembl ID ENSG00000050767
GTEx ID ENSG00000050767

Orthologous Gene

Mouse[1]  NM_153393
Rat[1]  NM_181636

Chromosomal Region

5q35.3  [177,664,619  -  178,017,556]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

12477932
12644459
15231747
15489334
16728390
17627939
19724895
19851296
20198315
20379614
20447926
21652699
23251661
23568457

Gene Ontology  (GO ID)

Biological Process

GO:0030574  collagen catabolic process
GO:0022617  extracellular matrix disassembly
GO:0030198  extracellular matrix organization

Cellular Component

GO:0005581  collagen
GO:0005788  endoplasmic reticulum lumen
GO:0016021  integral to membrane
GO:0005886  plasma membrane