protocadherin 21

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Synonym

PCDH21, KIAA1775, DKFZp434A132, protocadherin 21

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:21.30 cerebellum:12.60 brain stem:- corpus callosum/glia:- pineal gland:741.70 peripheral nerve:- spine:- retina:118.60 eye:335 artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:18.90 thymus:12.90 bone marrow:- adipose:- bone:12.80 skin:24
GeneChip cerebrum:5.47 cerebellum:4.92 brain stem:5.57 corpus callosum/glia:4.95 pineal gland:- peripheral nerve:5.16 spine:4.93 retina:- eye:- artery/aorta:4.87 vein:4.77 lymphnode:4.92 peripheral blood:- spleen:5.52 thymus:5.19 bone marrow:4.72 adipose:4.96 bone:- skin:7.64
CAGE cerebrum:2.58 cerebellum:- brain stem:2.30 corpus callosum/glia:1.99 pineal gland:5.03 peripheral nerve:- spine:1.23 retina:- eye:- artery/aorta:0.47 vein:1.23 lymphnode:1.08 peripheral blood:- spleen:1.21 thymus:1.93 bone marrow:- adipose:0.14 bone:- skin:-
RNA-seq cerebrum:1.12 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0.82 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0.04 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:- esophagus:- stomach:- intestine:64.80 colon:127.20     liver/hepato:-        lung:-    bladder:- kidney:31.20 pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:18.60 salivary:-
GeneChip uterus:4.74 placenta:4.32 prostate:4.68 ovary:4.63 testis:4.49 heart:4.52 muscle:4.65 esophagus:5.68 stomach:4.61 intestine:4.74 colon:6.34 liver/hepato:4.78 lung:4.75 bladder:- kidney:4.67 pituitary:4.85 thyroid/parathyroid:4.60 adrenal gland:4.66 pancreas:4.73 breast:5.54 salivary:4.53
CAGE uterus:0.71 placenta:0.24 prostate:0.70 ovary:0.52 testis:0.71 heart:0.84 muscle:0.05 esophagus:2.54 stomach:- intestine:0.77 colon:3.20     liver/hepato:0.14    lung:0.31 bladder:0.09 kidney:0.82 pituitary:0.66 thyroid/parathyroid:0.23 adrenal gland:- pancreas:0 breast:0 salivary:0.36
RNA-seq uterus:- placenta:- prostate:0.23 ovary:0.43 testis:0.17 heart:0.06 muscle:0 esophagus:- stomach:- intestine:- colon:1.37     liver/hepato:0.02        lung:0.12    bladder:- kidney:0.49 pituitary:- thyroid/parathyroid:0.01 adrenal gland:0.67 pancreas:- breast:0.01 salivary:-

Gene Information

IDs

Refseq ID NM_033100
Gene ID 92211
Unigene ID Hs.137556
Probe set ID 213369_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000148600
GTEx ID ENSG00000148600

Orthologous Gene

Mouse[1]  NM_130878
Rat[1]  NM_053572

Chromosomal Region

10q23.1  [85,954,410  -  85,979,377]

Gene Family (Interpro ID)

IPR002126  Cadherin
IPR015919  Cadherin-like

Link to Pubmed  (Pubmed ID)

8889548
11597768
12477932
16288196
16344560
16385451
18654668
20087419
20498078
20805371
21697133
21875946
23044944
23233793
24265541

Gene Ontology  (GO ID)

Biological Process

GO:0007156  homophilic cell adhesion
GO:0045494  photoreceptor cell maintenance

Cellular Component

GO:0005887  integral to plasma membrane
GO:0042622  photoreceptor outer segment membrane

Molecular Function

GO:0005509  calcium ion binding