lipopolysaccharide-induced TNF factor

Synonym

SIMPLE, LITAF, TP53I7, LPS-induced TNF-alpha factor, FLJ38636, MGC125274, PIG7, MGC125276, MGC116698, CMT1C, MGC116701, p53-induced protein 7, lipopolysaccharide-induced TNF factor, MGC125275, MGC116700

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:186.10

cerebellum:100.80

brain stem:-

corpus callosum/glia:466.60

pineal gland:-

peripheral nerve:521.40

spine:112.30

retina:237.30

eye:123.40

artery/aorta:149.90

vein:-

lymphnode:141.50

peripheral blood:1129.60

spleen:983.10

thymus:412.30

bone marrow:314.90

adipose:201.70

bone:371.10

skin:312

GeneChip

cerebrum:7.41

cerebellum:5.59

brain stem:8.04

corpus callosum/glia:8.78

pineal gland:-

peripheral nerve:8.55

spine:8.56

retina:-

eye:-

artery/aorta:8.18

vein:7.84

lymphnode:8.62

peripheral blood:-

spleen:9.19

thymus:7.64

bone marrow:9.04

adipose:8.27

bone:-

skin:7.97

CAGE

cerebrum:4.42

cerebellum:-

brain stem:4.81

corpus callosum/glia:5.40

pineal gland:4.03

peripheral nerve:-

spine:5.37

retina:-

eye:-

artery/aorta:5.78

vein:5.42

lymphnode:5.45

peripheral blood:-

spleen:5.60

thymus:4.33

bone marrow:-

adipose:5.60

bone:-

skin:-

RNA-seq

cerebrum:5.31

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:6.30

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:6.84

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:692.60

placenta:258.70

prostate:529.40

ovary:186.30

testis:21.60

heart:319.30

muscle:20.10

esophagus:-

stomach:106.20

intestine:745.20

colon:169.60

liver/hepato:126.70

lung:444.80

bladder:879.30

kidney:259.90

pituitary:116

thyroid/parathyroid:-

adrenal gland:406.30

pancreas:97.80

breast:167.30

salivary:328.40

GeneChip

uterus:8.78

placenta:8.43

prostate:9.15

ovary:8.70

testis:5.57

heart:7.71

muscle:6.29

esophagus:7.75

stomach:8.28

intestine:7.81

colon:8.85

liver/hepato:8.17

lung:9.37

bladder:-

kidney:9.06

pituitary:7.10

thyroid/parathyroid:9.04

adrenal gland:7.75

pancreas:8.01

breast:8.69

salivary:9.14

CAGE

uterus:5.29

placenta:5.31

prostate:5.22

ovary:5.34

testis:3.79

heart:5.20

muscle:4.45

esophagus:4.55

stomach:-

intestine:4.69

colon:4.96

liver/hepato:5.59

lung:5.87

bladder:5.44

kidney:5.15

pituitary:4.35

thyroid/parathyroid:5.47

adrenal gland:-

pancreas:4.72

breast:5.78

salivary:5.77

RNA-seq

uterus:-

placenta:-

prostate:6.41

ovary:6.69

testis:5.10

heart:4.06

muscle:4.44

esophagus:-

stomach:-

intestine:-

colon:6.05

liver/hepato:4.76

lung:8.05

bladder:-

kidney:6.15

pituitary:-

thyroid/parathyroid:5.69

adrenal gland:5.87

pancreas:-

breast:6.02

salivary:-

IDs

Refseq ID	NM_001136472
Gene ID	9516
Unigene ID	Hs.459940
Probe set ID	200706_s_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000189067
GTEx ID	ENSG00000189067

Orthologous Gene

Mouse[3]	NM_019980
Rat[2]	NM_001105735

Chromosomal Region

16p13.13 [11,641,582 - 11,680,806]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

IPR006629

LPS-induced tumor necrosis factor alpha factor

GO:0006915	apoptosis
GO:0071222	cellular response to lipopolysaccharide
GO:0042347	negative regulation of NF-kappaB import into nucleus
GO:0043123	positive regulation of I-kappaB kinase/NF-kappaB cascade
GO:0001817	regulation of cytokine production
GO:0006357	regulation of transcription from RNA polymerase II promoter
GO:0007165	signal transduction
GO:0006351	transcription, DNA-dependent

GO:0005794	Golgi apparatus
GO:0005765	lysosomal membrane
GO:0005886	plasma membrane

GO:0005515	protein binding
GO:0004871	signal transducer activity
GO:0050699	WW domain binding

lipopolysaccharide-induced TNF factor

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function