LIM homeobox protein 3

Synonym

P-LIM, LIM homeobox protein 3, Homeobox protein P-LIM, Lhx3, mLim-3, Lim-3, LIM/homeobox protein Lhx3, Plim, Lim3, Homeobox protein LIM-3, mLIM3

normal 40 tissues
developmental tissues and primary cells（FANTOM5 CAGE）

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:1.70

cerebellum:36.80

brain stem:-

corpus callosum/glia:-

pineal gland:257.80

peripheral nerve:-

spine:94.60

retina:32.10

eye:-

artery/aorta:-

vein:-

lymphnode:-

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:-

bone:-

skin:-

GeneChip

cerebrum:4.99

cerebellum:4.80

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:5.12

spine:5.86

retina:6.04

eye:5.73

artery/aorta:-

vein:4.98

lymphnode:4.64

peripheral blood:-

spleen:4.93

thymus:-

bone marrow:5.09

adipose:5.19

bone:5.25

skin:4.93

CAGE

cerebrum:0

cerebellum:-

brain stem:0.07

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:0.17

retina:-

eye:-

artery/aorta:0

vein:-

lymphnode:0

peripheral blood:-

spleen:0

thymus:0

bone marrow:-

adipose:-

bone:0

skin:0

RNA-seq

cerebrum:0.38

cerebellum:0.38

brain stem:0.38

corpus callosum/glia:0.38

pineal gland:0.38

peripheral nerve:0.38

spine:0.38

retina:0.38

eye:0.38

artery/aorta:-

vein:-

lymphnode:-

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:-

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:-

placenta:-

prostate:-

ovary:-

testis:-

heart:-

muscle:-

esophagus:-

stomach:-

intestine:-

colon:-

liver/hepato:-

lung:-

bladder:-

kidney:-

pituitary:271.30

thyroid/parathyroid:-

adrenal gland:-

pancreas:-

breast:-

salivary:-

GeneChip

uterus:4.83

placenta:5.42

prostate:5.18

ovary:4.80

testis:5.56

heart:5.61

muscle:5.20

esophagus:-

stomach:5.38

intestine:5.02

colon:-

liver/hepato:5.51

lung:4.77

bladder:4.99

kidney:5.49

pituitary:10.95

thyroid/parathyroid:-

adrenal gland:4.85

pancreas:6.05

breast:5.14

salivary:5.60

CAGE

uterus:0

placenta:0

prostate:0

ovary:0

testis:0

heart:-

muscle:-

esophagus:-

stomach:0

intestine:0

colon:0

liver/hepato:0

lung:0

bladder:0.18

kidney:-

pituitary:4.31

thyroid/parathyroid:-

adrenal gland:0

pancreas:0

breast:0

salivary:-

RNA-seq

uterus:-

placenta:-

prostate:-

ovary:-

testis:-

heart:-

muscle:-

esophagus:-

stomach:-

intestine:-

colon:-

liver/hepato:-

lung:-

bladder:-

kidney:-

pituitary:-

thyroid/parathyroid:-

adrenal gland:-

pancreas:-

breast:-

salivary:-

IDs

Refseq ID	NM_001039653
Gene ID	16871
Unigene ID	Mm.386765
Probe set ID	1425041_at [Mouse430_2]
Ensembl ID	ENSMUSG00000026934

Orthologous Gene

Human[2]	NM_014564, NM_178138
Rat[2]	NM_014564, NM_178138

Chromosomal Region

Gene Family (Interpro ID)

IPR001356	Homeobox
IPR009057	Homeodomain-like
IPR012287	Homeodomain-related

Gene Ontology (GO ID)

Biological Process

GO:0030154	cell differentiation
GO:0009953	dorsal/ventral pattern formation
GO:0021526	medial motor column neuron differentiation
GO:0008045	motor axon guidance
GO:0043066	negative regulation of apoptosis
GO:0021983	pituitary gland development
GO:0001890	placenta development
GO:0045944	positive regulation of transcription from RNA polymerase II promoter
GO:0045893	positive regulation of transcription, DNA-dependent
GO:0006355	regulation of transcription, DNA-dependent
GO:0021527	spinal cord association neuron differentiation
GO:0021520	spinal cord motor neuron cell fate specification
GO:0006351	transcription, DNA-dependent
GO:0021521	ventral spinal cord interneuron specification

Cellular Component

GO:0005622	intracellular
GO:0005634	nucleus
GO:0005667	transcription factor complex

Molecular Function

GO:0003677	DNA binding
GO:0046872	metal ion binding
GO:0005515	protein binding
GO:0043565	sequence-specific DNA binding
GO:0003700	transcription factor activity
GO:0008270	zinc ion binding

LIM homeobox protein 3

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function