splicing factor, arginine/serine-rich 5 (SRp40, HRS)

 jump to detail

Synonym

Hrs, MGC96781, Sfrs5, Pre-mRNA-splicing factor SRP40, Splicing factor, arginine/serine-rich 5, Delayed-early protein HRS

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:163.20 cerebellum:55.30 brain stem:63.60 corpus callosum/glia:- pineal gland:- peripheral nerve:324.80 spine:141.90 retina:578.60 eye:645.90 artery/aorta:- vein:- lymphnode:54 peripheral blood:416.90 spleen:52.70 thymus:177.80 bone marrow:218 adipose:- bone:475.90 skin:197.90
GeneChip cerebrum:11.97 cerebellum:12.43 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:11.44 spine:11.32 retina:10.42 eye:9.66 artery/aorta:- vein:12.39 lymphnode:12.76 peripheral blood:- spleen:12.47 thymus:- bone marrow:12.50 adipose:11.90 bone:12.47 skin:12.71
CAGE nodata
RNA-seq cerebrum:25.76 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:392.60 placenta:179.50 prostate:247.10 ovary:160.90 testis:170 heart:204.60 muscle:284.10 esophagus:- stomach:1701.90 intestine:221.80 colon:458.20     liver/hepato:126.70        lung:281.20    bladder:132.40 kidney:386.90 pituitary:645.90 thyroid/parathyroid:899.80 adrenal gland:848.90 pancreas:553.60 breast:453.80 salivary:162
GeneChip uterus:12.63 placenta:12.27 prostate:12.65 ovary:12.53 testis:11.31 heart:10.63 muscle:10.57 esophagus:- stomach:11.68 intestine:11.91 colon:- liver/hepato:11.20 lung:12.16 bladder:12.33 kidney:11.34 pituitary:12 thyroid/parathyroid:- adrenal gland:12.55 pancreas:11.70 breast:12.19 salivary:11.75
CAGE nodata
RNA-seq uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:14.89 esophagus:- stomach:- intestine:- colon:-     liver/hepato:15.44        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-

Gene Information

IDs

Refseq ID NM_001079694
Gene ID 20384
Unigene ID Mm.43331
Probe set ID 1423130_a_at  [Mouse430_2]
Ensembl ID ENSMUSG00000021134

Orthologous Gene

Human[4]  NM_001039465, NM_006925
Rat [0]  

Chromosomal Region

-

Gene Family (Interpro ID)

IPR000504  RNA recognition motif, RNP-1

Link to Pubmed  (Pubmed ID)

9434190
9857059
10349636
10922068
11042159
11076861
11217851
12466851
12477932
12904583
14610273
15684423
15761153
15798186
16033648
16141072
16141073
16602821
17391668
17967808
18758164
18799693
20059953
20516191
23536862

Gene Ontology  (GO ID)

Biological Process

GO:0006397  mRNA processing
GO:0006355  regulation of transcription, DNA-dependent
GO:0009611  response to wounding
GO:0008380  RNA splicing
GO:0006351  transcription, DNA-dependent

Cellular Component

GO:0005737  cytoplasm
GO:0016607  nuclear speck
GO:0005730  nucleolus
GO:0005634  nucleus

Molecular Function

GO:0003676  nucleic acid binding
GO:0000166  nucleotide binding
GO:0005515  protein binding
GO:0003723  RNA binding
GO:0050733  RS domain binding