SNW domain containing 1

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Synonym

Nuclear protein SkiP, AW048543, SNW1, Ski-interacting protein, NCoA-62, SKIP, Skiip, SNW domain-containing protein 1, 2310008B08Rik, Snw1, SNW domain containing 1

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:33 cerebellum:- brain stem:95.30 corpus callosum/glia:- pineal gland:- peripheral nerve:19.10 spine:47.30 retina:- eye:98.80 artery/aorta:- vein:- lymphnode:- peripheral blood:28.80 spleen:13.20 thymus:9.90 bone marrow:- adipose:- bone:25 skin:55.40
GeneChip cerebrum:8.83 cerebellum:8.75 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:8.65 spine:8.47 retina:9.96 eye:9.55 artery/aorta:- vein:8.60 lymphnode:9.14 peripheral blood:- spleen:9 thymus:- bone marrow:8.97 adipose:8.58 bone:9.06 skin:9.20
CAGE cerebrum:3.53 cerebellum:- brain stem:3.51 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:3.44 retina:- eye:- artery/aorta:3.06 vein:- lymphnode:3.82 peripheral blood:- spleen:3.19 thymus:3.38 bone marrow:- adipose:- bone:3.35 skin:3.33
RNA-seq cerebrum:12.97 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:43.60 placenta:41.40 prostate:185.30 ovary:23 testis:36.90 heart:- muscle:- esophagus:- stomach:- intestine:- colon:-     liver/hepato:27.20        lung:30.10    bladder:- kidney:40.30 pituitary:25.80 thyroid/parathyroid:- adrenal gland:- pancreas:28.10 breast:22.90 salivary:-
GeneChip uterus:9.20 placenta:8.52 prostate:9.18 ovary:9.25 testis:8.98 heart:8.77 muscle:9.10 esophagus:- stomach:8.59 intestine:8.76 colon:- liver/hepato:8.15 lung:8.95 bladder:9.14 kidney:8.51 pituitary:9.20 thyroid/parathyroid:- adrenal gland:8.84 pancreas:8.30 breast:9.17 salivary:9.32
CAGE uterus:3.57 placenta:2.97 prostate:3.18 ovary:3.47 testis:4.25 heart:- muscle:- esophagus:- stomach:3.17 intestine:3.09 colon:3.29     liver/hepato:3.47    lung:3.41 bladder:3.37 kidney:- pituitary:3.53 thyroid/parathyroid:- adrenal gland:3.52 pancreas:2.33 breast:3.46 salivary:-
RNA-seq uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:12.81 esophagus:- stomach:- intestine:- colon:-     liver/hepato:7.15        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-

Gene Information

IDs

Refseq ID NM_025507
Gene ID 66354
Unigene ID Mm.271174
Probe set ID 1429002_at  [Mouse430_2]
Ensembl ID ENSMUSG00000021039

Orthologous Gene

Human[2]  NM_012245
Rat [0]  

Chromosomal Region

-

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

8889548
10349636
11042159
11076861
11217851
12466851
12477932
12529369
12904583
14610273
14681479
14729942
15878163
16141072
16141073
17592128
18287559
18799693
19934264
20059953
20360068
20362541
21267068
22147266

Gene Ontology  (GO ID)

Biological Process

GO:0071300  cellular response to retinoic acid
GO:0042771  DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis
GO:0006397  mRNA processing
GO:0000122  negative regulation of transcription from RNA polymerase II promoter
GO:0045892  negative regulation of transcription, DNA-dependent
GO:0000398  nuclear mRNA splicing, via spliceosome
GO:0043923  positive regulation by host of viral transcription
GO:0051571  positive regulation of histone H3-K4 methylation
GO:0050769  positive regulation of neurogenesis
GO:0048026  positive regulation of nuclear mRNA splicing, via spliceosome
GO:0045944  positive regulation of transcription from RNA polymerase II promoter
GO:0030511  positive regulation of transforming growth factor beta receptor signaling pathway
GO:0070564  positive regulation of vitamin D receptor signaling pathway
GO:0048385  regulation of retinoic acid receptor signaling pathway
GO:0006355  regulation of transcription, DNA-dependent
GO:0070562  regulation of vitamin D receptor signaling pathway
GO:0048384  retinoic acid receptor signaling pathway
GO:0008380  RNA splicing
GO:0006351  transcription, DNA-dependent

Cellular Component

GO:0071013  catalytic step 2 spliceosome
GO:0000785  chromatin
GO:0016363  nuclear matrix
GO:0044428  nuclear part
GO:0005634  nucleus
GO:0008024  positive transcription elongation factor complex b
GO:0071146  SMAD3-SMAD4 protein complex
GO:0005681  spliceosomal complex

Molecular Function

GO:0005112  Notch binding
GO:0035257  nuclear hormone receptor binding
GO:0005515  protein binding
GO:0042974  retinoic acid receptor binding
GO:0046332  SMAD binding
GO:0003713  transcription coactivator activity
GO:0003714  transcription corepressor activity
GO:0042809  vitamin D receptor binding