HIV TAT specific factor 1

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Synonym

HIV Tat-specific factor 1 homolog, 2700077B20Rik, HIV TAT specific factor 1, TAT-SF1, 2600017A12Rik, 1600023H17Rik, Htatsf1

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:41.70 cerebellum:55.30 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:94.60 retina:32.10 eye:15.20 artery/aorta:- vein:- lymphnode:21.60 peripheral blood:- spleen:79 thymus:79 bone marrow:- adipose:- bone:62.60 skin:47.50
GeneChip cerebrum:9.61 cerebellum:9.96 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:9.31 spine:9.20 retina:9.90 eye:9.58 artery/aorta:- vein:9.54 lymphnode:9.46 peripheral blood:- spleen:9.09 thymus:- bone marrow:9.28 adipose:9.57 bone:9.30 skin:9.89
CAGE cerebrum:4.29 cerebellum:- brain stem:3.88 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:4.04 retina:- eye:- artery/aorta:4.18 vein:- lymphnode:4.18 peripheral blood:- spleen:3.22 thymus:3.75 bone marrow:- adipose:- bone:3.75 skin:4.05
RNA-seq cerebrum:3.42 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:27.60 prostate:61.80 ovary:23 testis:36.90 heart:55.80 muscle:- esophagus:- stomach:32.70 intestine:73.90 colon:-     liver/hepato:54.30        lung:120.50    bladder:66.20 kidney:64.50 pituitary:103.30 thyroid/parathyroid:- adrenal gland:- pancreas:93.80 breast:39.20 salivary:54
GeneChip uterus:9.24 placenta:10.96 prostate:9.69 ovary:9.62 testis:8.30 heart:10 muscle:10.84 esophagus:- stomach:8.83 intestine:8.82 colon:- liver/hepato:8.63 lung:9.15 bladder:9.68 kidney:8.86 pituitary:12.68 thyroid/parathyroid:- adrenal gland:9.37 pancreas:9.10 breast:9.67 salivary:10
CAGE uterus:3.64 placenta:5.23 prostate:3.77 ovary:3.91 testis:3.95 heart:- muscle:- esophagus:- stomach:3.91 intestine:3.33 colon:3.32     liver/hepato:3.41    lung:3.74 bladder:3.85 kidney:- pituitary:6.10 thyroid/parathyroid:- adrenal gland:3.66 pancreas:3.99 breast:3.73 salivary:-
RNA-seq uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:10.58 esophagus:- stomach:- intestine:- colon:-     liver/hepato:4.04        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-

Gene Information

IDs

Refseq ID NM_028242
Gene ID 72459
Unigene ID Mm.21520
Probe set ID 1454760_at  [Mouse430_2]
Ensembl ID ENSMUSG00000067873

Orthologous Gene

Human[4]  NM_001163280, NM_014500
Rat[1]  NM_001108259, NM_014500

Chromosomal Region

-

Gene Family (Interpro ID)

IPR000504  RNA recognition motif, RNP-1
IPR003954  RNA recognition, domain 1

Link to Pubmed  (Pubmed ID)

8889548
10349636
10922068
11042159
11076861
11217851
12466851
12477932
15345747
15485897
15489334
16033648
16141072
16141073
20059953
21267068
21677750

Gene Ontology  (GO ID)

Biological Process

GO:0008150  biological_process
GO:0006355  regulation of transcription, DNA-dependent
GO:0006351  transcription, DNA-dependent

Cellular Component

GO:0005634  nucleus

Molecular Function

GO:0003674  molecular_function
GO:0003676  nucleic acid binding
GO:0000166  nucleotide binding
GO:0003723  RNA binding