collagen, type IV, alpha 6

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Synonym

procollagen, type IV, alpha 6, BB116301, Col4a6

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:45.20 cerebellum:55.30 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:210.20 spine:- retina:32.10 eye:83.60 artery/aorta:84.40 vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:102.60 adipose:- bone:12.50 skin:47.50
GeneChip cerebrum:4.33 cerebellum:4.50 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:4.11 spine:4.42 retina:4.44 eye:7.14 artery/aorta:- vein:8.82 lymphnode:4.28 peripheral blood:- spleen:4.37 thymus:- bone marrow:4.59 adipose:5.12 bone:4.35 skin:6.31
CAGE cerebrum:0.75 cerebellum:- brain stem:0.92 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:0.66 retina:- eye:- artery/aorta:3.11 vein:- lymphnode:0 peripheral blood:- spleen:0.29 thymus:0.27 bone marrow:- adipose:- bone:0 skin:2.92
RNA-seq cerebrum:0.71 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:- prostate:30.90 ovary:- testis:7.40 heart:- muscle:- esophagus:- stomach:- intestine:- colon:52.90     liver/hepato:-        lung:80.30    bladder:66.20 kidney:16.10 pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:88.20 salivary:-
GeneChip uterus:6.64 placenta:4.58 prostate:6.17 ovary:5.98 testis:4.52 heart:4.68 muscle:4.43 esophagus:- stomach:5.98 intestine:4.66 colon:- liver/hepato:4.84 lung:5.61 bladder:7.13 kidney:4.43 pituitary:4.59 thyroid/parathyroid:- adrenal gland:4.47 pancreas:4.72 breast:5.53 salivary:4.71
CAGE uterus:2.94 placenta:1.28 prostate:5.92 ovary:2.80 testis:0 heart:- muscle:- esophagus:- stomach:2.26 intestine:1.05 colon:1.34     liver/hepato:0.64    lung:2.78 bladder:3.81 kidney:- pituitary:1.56 thyroid/parathyroid:- adrenal gland:0.97 pancreas:1.30 breast:2.57 salivary:-
RNA-seq uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:0.45 esophagus:- stomach:- intestine:- colon:-     liver/hepato:0        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-

Gene Information

IDs

Refseq ID NM_053185
Gene ID 94216
Unigene ID Mm.155586
Probe set ID 1421007_at  [Mouse430_2]
Ensembl ID ENSMUSG00000031273

Orthologous Gene

Human[4]  NM_001847, NM_033641
Rat[4]  NM_001847, NM_033641

Chromosomal Region

-

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

10349636
10534397
10965041
11042159
11076861
11217851
11732842
12101409
12225806
12466851
12477932
14998921
15598179
15689378
15837576
15878328
16024816
16141072
16141073
16537572
17418794
18757743
19275937
19858219
20548288
20833366
21267068
22925884
23325811

Gene Ontology  (GO ID)

Biological Process

GO:0071230  cellular response to amino acid stimulus
GO:0030198  extracellular matrix organization

Cellular Component

GO:0005604  basement membrane
GO:0005581  collagen
GO:0005587  collagen type IV

Molecular Function

GO:0005198  structural molecule activity