collagen, type I, alpha 1

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Synonym

normal 40 tissues
data not exists

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:239.30

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:589.90

spine:-

retina:-

eye:248.80

artery/aorta:5714.30

vein:-

lymphnode:-

peripheral blood:-

spleen:390

thymus:-

bone marrow:-

adipose:1766.50

bone:4022

skin:15301.30

GeneChip

cerebrum:7.10

cerebellum:7.03

brain stem:6.57

corpus callosum/glia:-

pineal gland:-

peripheral nerve:6.71

spine:-

retina:-

eye:11.89

artery/aorta:-

vein:-

lymphnode:-

peripheral blood:-

spleen:7.32

thymus:7.15

bone marrow:9.03

adipose:-

bone:-

skin:-

CAGE

nodata

RNA-seq

nodata

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:2277.90

placenta:238.90

prostate:113.90

ovary:1369.40

testis:82.30

heart:407.20

muscle:10364.10

esophagus:-

stomach:1077.60

intestine:732.70

colon:-

liver/hepato:39.90

lung:304

bladder:-

kidney:127.60

pituitary:-

thyroid/parathyroid:-

adrenal gland:19607.80

pancreas:56.90

breast:-

salivary:-

GeneChip

uterus:-

placenta:-

prostate:-

ovary:-

testis:-

heart:8.19

muscle:9.30

esophagus:-

stomach:-

intestine:7.64

colon:8.45

liver/hepato:-

lung:-

bladder:-

kidney:8.14

pituitary:7.19

thyroid/parathyroid:-

adrenal gland:-

pancreas:-

breast:-

salivary:-

CAGE

nodata

RNA-seq

nodata

IDs

Refseq ID	NM_053304
Gene ID	29393
Unigene ID	Rn.2953
Probe set ID	rc_AI231472_s_at [RG_U34A]
Ensembl ID	ENSRNOG00000003897

Orthologous Gene

Human[8]	NM_000088
Mouse[4]	NM_007742

Chromosomal Region

10q31 [83,622,549 - 83,638,015]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

IPR000276	7TM GPCR, rhodopsin-like
IPR002233	Adrenergic receptor
IPR000681	Adrenergic receptor, beta 3
IPR017452	GPCR, rhodopsin-like superfamily

Gene Ontology (GO ID)

Biological Process

GO:0001568	blood vessel development
GO:0060346	bone trabecula formation
GO:0060351	cartilage development involved in endochondral bone morphogenesis
GO:0071230	cellular response to amino acid stimulus
GO:0071363	cellular response to growth factor stimulus
GO:0071260	cellular response to mechanical stimulus
GO:0071300	cellular response to retinoic acid
GO:0032964	collagen biosynthetic process
GO:0030199	collagen fibril organization
GO:0048706	embryonic skeletal system development
GO:0001958	endochondral ossification
GO:0060325	face morphogenesis
GO:0001957	intramembranous ossification
GO:0010812	negative regulation of cell-substrate adhesion
GO:0001503	ossification
GO:0001649	osteoblast differentiation
GO:0030335	positive regulation of cell migration
GO:0010718	positive regulation of epithelial to mesenchymal transition
GO:0045893	positive regulation of transcription, DNA-dependent
GO:0070208	protein heterotrimerization
GO:0034504	protein localization in nucleus
GO:0015031	protein transport
GO:0051591	response to cAMP
GO:0031960	response to corticosteroid stimulus
GO:0042542	response to hydrogen peroxide
GO:0010035	response to inorganic substance
GO:0009612	response to mechanical stimulus
GO:0007584	response to nutrient
GO:0043434	response to peptide hormone stimulus
GO:0007605	sensory perception of sound
GO:0001501	skeletal system development
GO:0048705	skeletal system morphogenesis
GO:0043588	skin development
GO:0043589	skin morphogenesis
GO:0034505	tooth mineralization
GO:0007601	visual perception
GO:0042060	wound healing

Cellular Component

GO:0005581	collagen
GO:0005584	collagen type I
GO:0005737	cytoplasm
GO:0031012	extracellular matrix
GO:0005576	extracellular region
GO:0005615	extracellular space
GO:0005578	proteinaceous extracellular matrix

Molecular Function

GO:0005201	extracellular matrix structural constituent
GO:0042802	identical protein binding
GO:0046872	metal ion binding
GO:0003674	molecular_function
GO:0048407	platelet-derived growth factor binding

collagen, type I, alpha 1

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function