regulatory factor X, 5 (influences HLA class II expression)

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Synonym

-

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST nodata
GeneChip cerebrum:6.34 cerebellum:6.89 brain stem:6.83 corpus callosum/glia:- pineal gland:- peripheral nerve:6.21 spine:- retina:- eye:6 artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:7.47 thymus:7.67 bone marrow:6.30 adipose:- bone:- skin:-
CAGE nodata
RNA-seq nodata
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST nodata
GeneChip uterus:- placenta:- prostate:- ovary:- testis:- heart:5.77 muscle:5.30 esophagus:- stomach:- intestine:6.05 colon:6.19 liver/hepato:- lung:- bladder:- kidney:5.79 pituitary:8.62 thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-
CAGE nodata
RNA-seq nodata

Gene Information

IDs

Refseq ID NM_001107694
Gene ID 310659
Unigene ID -
Probe set ID rc_AA892273_at  [RG_U34A]
Ensembl ID ENSRNOG00000021012

Orthologous Gene

Human[4]  NM_000449, NM_001025603
Mouse[1]  NM_017395, NM_001025603

Chromosomal Region

2q34  [189,855,438  -  189,862,953]

Gene Family (Interpro ID)

IPR017956  AT hook, DNA-binding motif
IPR003150  DNA-binding RFX
IPR011991  Winged helix repressor DNA-binding
IPR005417  Zona occludens protein
IPR005420  Zona occludens protein ZO-3

Link to Pubmed  (Pubmed ID)

7744245
9401005
12477932
12968017

Gene Ontology  (GO ID)

Biological Process

GO:0008150  biological_process
GO:0000122  negative regulation of transcription from RNA polymerase II promoter

Cellular Component

GO:0005575  cellular_component

Molecular Function

GO:0003677  DNA binding
GO:0003674  molecular_function