Y box binding protein 1

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Synonym

-

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:131.60 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:248.80 artery/aorta:357.10 vein:- lymphnode:- peripheral blood:- spleen:156 thymus:491.60 bone marrow:- adipose:- bone:- skin:-
GeneChip cerebrum:9.26 cerebellum:9.88 brain stem:8.69 corpus callosum/glia:- pineal gland:- peripheral nerve:10.30 spine:- retina:- eye:10.34 artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:10.54 thymus:11.15 bone marrow:10.89 adipose:- bone:- skin:-
CAGE nodata
RNA-seq nodata
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:79.60 prostate:189.80 ovary:228.20 testis:411.70 heart:310.20 muscle:- esophagus:- stomach:- intestine:104.70 colon:-     liver/hepato:53.20        lung:506.60    bladder:- kidney:574.30 pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-
GeneChip uterus:- placenta:- prostate:- ovary:- testis:- heart:11.65 muscle:11.46 esophagus:- stomach:- intestine:11.33 colon:11.29 liver/hepato:- lung:- bladder:- kidney:11.45 pituitary:10.19 thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-
CAGE nodata
RNA-seq nodata

Gene Information

IDs

Refseq ID NM_031563
Gene ID 500538
Unigene ID Rn.110976
Probe set ID S83025_s_at  [RG_U34A]
Ensembl ID ENSRNOG00000032902

Orthologous Gene

Human [0]  
Mouse [0]  

Chromosomal Region

1q35  [175,179,440  -  175,180,408]

Gene Family (Interpro ID)

IPR011129  Cold shock protein
IPR002059  Cold-shock protein, DNA-binding
IPR016027  Nucleic acid-binding, OB-fold-like

Link to Pubmed  (Pubmed ID)

1967130
9043061
12010125
12477932
12554649
12835324
14559349
14604279
15489334
15615704
16002047
16158057
16278212
16508950
16641100
17893273
19323802
19590238
19640841
20046924
20679336
22337869
22361279
22801372

Gene Ontology  (GO ID)

Biological Process

GO:0070934  CRD-mediated mRNA stabilization
GO:0001701  in utero embryonic development
GO:0006397  mRNA processing
GO:0043066  negative regulation of apoptosis
GO:0046627  negative regulation of insulin receptor signaling pathway
GO:0051154  negative regulation of striated muscle cell differentiation
GO:0000122  negative regulation of transcription from RNA polymerase II promoter
GO:0051781  positive regulation of cell division
GO:0008284  positive regulation of cell proliferation
GO:0045944  positive regulation of transcription from RNA polymerase II promoter
GO:0006355  regulation of transcription, DNA-dependent
GO:0008380  RNA splicing
GO:0006351  transcription, DNA-dependent

Cellular Component

GO:0070937  CRD-mediated mRNA stability complex
GO:0005737  cytoplasm
GO:0030425  dendrite
GO:0005576  extracellular region
GO:0071204  histone pre-mRNA 3'end processing complex
GO:0043231  intracellular membrane-bounded organelle
GO:0005634  nucleus
GO:0048471  perinuclear region of cytoplasm
GO:0030529  ribonucleoprotein complex
GO:0010494  stress granule
GO:0005689  U12-type spliceosomal complex

Molecular Function

GO:0003677  DNA binding
GO:0003729  mRNA binding
GO:0002039  p53 binding
GO:0003723  RNA binding
GO:0043565  sequence-specific DNA binding
GO:0003697  single-stranded DNA binding
GO:0008134  transcription factor binding