clock homolog (mouse)

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Synonym

-

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:23.90 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:35.50 artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
GeneChip nodata
CAGE nodata
RNA-seq nodata
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:- esophagus:- stomach:- intestine:- colon:-     liver/hepato:-        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-
GeneChip nodata
CAGE nodata
RNA-seq nodata

Gene Information

IDs

Refseq ID NM_021856
Gene ID 60447
Unigene ID Rn.205839
Probe set ID -
Ensembl ID ENSRNOG00000002175

Orthologous Gene

Human[1]  NM_004898
Mouse[4]  NM_007715

Chromosomal Region

14p11  [34,218,466  -  34,258,054]

Gene Family (Interpro ID)

IPR000014  PAS
IPR013767  PAS fold
IPR013655  PAS fold-3
IPR017923  TFIIS N-terminal
IPR014765  Transcription elongation factor, TFIIS/CRSP70, N-terminal
IPR003617  Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
IPR010990  Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal

Link to Pubmed  (Pubmed ID)

10095082
12691740
15094047
15719143
15774559
15864751
15944262
16208722
16373438
16376516
16603678
17097616
17364576
18375864
19387896
19633447
19887760
21775066
22960268
23263459
23336172
23864491

Gene Ontology  (GO ID)

Biological Process

GO:0071479  cellular response to ionizing radiation
GO:0032922  circadian regulation of gene expression
GO:0007623  circadian rhythm
GO:0000077  DNA damage checkpoint
GO:0009649  entrainment of circadian clock
GO:0045944  positive regulation of transcription from RNA polymerase II promoter
GO:0006355  regulation of transcription, DNA-dependent
GO:0006974  response to DNA damage stimulus
GO:0006351  transcription, DNA-dependent

Cellular Component

GO:0005694  chromosome
GO:0005737  cytoplasm
GO:0043231  intracellular membrane-bounded organelle
GO:0005730  nucleolus
GO:0005634  nucleus
GO:0005667  transcription factor complex

Molecular Function

GO:0003677  DNA binding
GO:0070888  E-box binding
GO:0004402  histone acetyltransferase activity
GO:0046983  protein dimerization activity
GO:0004871  signal transducer activity
GO:0003700  transcription factor activity